|
| CompareByLength | GroupRename_callenv | ReadSeqVars | ali_pt_member |
| Complement | GroupSearch | RealignAttempt | alist |
| AbsLoc | ComplementLocation | GroupSearchCommon | Realigner | apd_sequence |
| ACI_Labeler | CompountT | GroupSizeKey | RecalcNeeded | arb_handlers |
| AdaptedAlignmentTransporter | CompountT< R()> | GroupUIdata | RecordingMacro | arb_params |
| AISC_Object | CompountT< R(P1)> | GroupXfer_callenv | Rectangle (AW) | arb_prm_struct |
| ALI_ALIGNER | CompountT< R(P1,...)> | GroupZombiesKey | RefContainer | arb_progress |
| ALI_ALIGNER_CONTEXT | CompountT< T & > |
| Reference | arb_r2a_pro_2_nuc |
| ALI_ARBDB | CompountT< T * > | References | arb_r2a_pro_2_nucs |
| ALI_GLOBAL | CompountT< T C::* > | HasLevelSmallerThan | ReferringEntriesHandler (RefEntries) | arb_status_implementation |
| ALI_MAP | CompountT< T[]> | HasntCurrentClusterPrefix | RefPtr | arb_suppress_progress |
| ALI_NORM_SEQUENCE | CompountT< T[N]> | Header | Refs | asserter (arb_test) |
| ALI_PATHMAP | CompressionRoot | HeaderList | RefSelector (RefEntries) | auto_delete_array_ptr |
| ALI_PREALIGNER | ConfigDefinition | HelixAlignmentQuality | RegExpr | auto_delete_ptr |
| ALI_PREALIGNER_CONTEXT | ConfigDeleter | HelixNrInfo | RegFieldSelection | auto_free_ptr |
| ALI_PROFILE | ConfigMapping | Helpfile | RegMatch | aw_stg_struct |
| ALI_PROFILE_CONTEXT | ConfigModifier | Hit | RequiresActionTracker | aw_toggle_data |
| ALI_PT | ConfigRenamer | HitCounter | ResourceStack | aw_xargs |
| ALI_PT_CONTEXT | Consensus | Host (ARB_type_traits) | RNA3D_Global | awar_vars |
| ALI_selection | ConsensusBuildParams | Hs_struct | RNA3D_Graphics | awModDef |
| ALI_sellst_spec | ConsensusReference |
| RootAsWindowCallback | awt_assignment |
| ALI_SEQUENCE | ConsensusTree | RootSynchronizer | awt_check_box |
| ALI_SUB_SOLUTION | ConsensusTreeBuilder | ID_checker | RSpecSet | awt_hotkeys |
| ALI_TARRAY | ConstParamT | IfThenElseType | Rule (FieldTransfer) | awt_input_field |
| ALI_TLIST | ConstParamT< T * > | IfThenElseType< false, T, F > | RulerScaler | awt_input_handler |
| ALI_TLIST_ELEM | ConstParamT< void > | IfThenElseType< true, T, F > | RuleSet (FieldTransfer) | awt_input_mask_global |
| ALI_TSTACK | ConstStrArray | Importer |
| awt_input_mask_id_list |
| AliAdmin | ConsumeUDC | ImportFieldScanner | awt_item_type_selector |
| AliApplicable | ConsumeUDC< T, false > | ImportSession | S_cfgLine | awt_linked_to_item |
| AliAutoFormatCommand | ConsumeUDC< void, convert_possible > | ImportTestData | S_Frand | awt_mask_action |
| AliChange | Convaln_exception | InfoWindow | S_RNS | awt_mask_awar_item |
| AliCompositeCommand | ConvertibleData | InfoWindowRegistry | S_Spreading | awt_mask_item |
| AliData | Counted | InputFileError | SAI_graphic | awt_numeric_input_field |
| AliDataSlice | CurrSpecies | InputFormat | SAI_selection | awt_radio_button |
| AliDeleteCommand | CursorPos | InsertData | SAI_sellst_spec | awt_string_handler |
| AliEditCommand |
| Insertions | SAI_string_builder | awt_text_viewport |
| AliEditor | InsertPerfMeter | SaiAciApplicator | awt_variable |
| AliEntryCounter | Data | Int | SaiBoolchainOperator | awt_viewport |
| AlignBuffer | DataLoc | Interpreter | SaiBoolRule | awXKeymap |
| AlignDataAccess | DB_scalable | IRS_data | SaiCalcEnv | awXKeymap_modfree |
| Aligner | DBerror | IsCallback | SaiCalculator |
|
| Alignment | DBID | IsClassT | SaiOperator |
| AlignmentReference | DbQuery (QUERY) | IsEnumT | Sampler | binop_pair |
| AlignmentTransporter (FieldTransfer) | DbScanner | IsFunctionT | Scaler | bitcounter |
| AlignParams | DBwriter | IsFundaT | ScopedTransporter | bytestring |
| AliInsertCommand | DecisionTree | IsSpecificCallback | SCP_Less |
|
| AliNameAndType | DeconstructedTree | IsSpecificHierarchyCallback | ScrollSynchronizer |
| AliView | DefinedCommands | Item | SearchAwarList | cached_taxonomy |
| Ambiguity (chartable) | DelayReshade | ItemClonedByRuleSet (FieldTransfer) | SearchedTree | case_op |
| AN_gl_struct | Deletable | Itemfield_Selection | SearchFIFO | PT_statistic::chain_head_mem |
| Angle (AW) | DendroSubtreeLimits | ItemFieldShader | SearchParameter | charpLess |
| AngleBuffer | DepthMarker | ItemShader | SearchRelativeParams | cilist |
| AP_combinableSeq | Desco (validNames) |
| SearchRelativesReference | client_msg_queue |
| AP_DefaultTreeShader | DesignTargets | SearchSettings | cllist |
| AP_filter | DI_ENTRY | JoinedLocation | SearchTree | cmp_candidates |
| AP_main | DI_GLOBAL_MATRIX |
| SearchTreeNode | cmp_Rectangles |
| AP_matrix | DI_MATRIX | SEC_base | color_save_data |
| AP_pos_var | Dict | Keeper | SEC_base_iterator | column |
| AP_rates | DictData | KeyInfo | SEC_base_part | common_filter_params |
| AP_sequence | DictTree | KeySorter | SEC_base_part_iterator | comparator |
| AP_sequence_simple_protein | DiffLines | KL_params | SEC_bond_def | compare_by_criteria |
| AP_smatrix | DisplayFormat | KL_Settings | SEC_constrainted | complex |
| AP_STACK | DistanceCounter |
| SEC_db_interface | consensus_result |
| AP_subtree | Distributor | SEC_dbcb | containing (arb_test) |
| AP_tree | DNA_Table | Label | SEC_displayParams | copy (arb_test) |
| AP_tree_edge | DontTransportAlignment | Lazy | SEC_drawn_positions | copy< const char * > (arb_test) |
| AP_tree_folding | Dots | LazyAliData | SEC_oriented | copy< copy< T > > (arb_test) |
| AP_tree_members | Dragged | LazyFloat | SEC_region | count_mutpsite |
| AP_tree_root | DragNDrop | LazyPersistantFlag | SEC_root | count_nothing |
| AP_TreeShader | DupCriteria | LeafRelation | SEC_segment_iterator | count_unweighted |
| AP_userdef_matrix | DuplicateLinkFilter | TreeNode::LengthCollector | SEC_seq_data | count_weighted |
| AP_weights | DupNameCriterion | LikelihoodRanges | SEC_strand_const_iterator | counter (ArbProgress) |
| ARB_countedTree |
| LimitedTime | SEC_strand_iterator | counter |
| ARB_edge | LimitTracker | SEC_structure_toggler | cursorpos |
| ARB_ERROR | ED4_abstract_group_manager | LineAttachedMessage | SelectedDatabase | custom_dealloc_ptr |
| ARB_inc_sleep | ED4_abstract_sequence_terminal | LineBuf | SelectionListSpec | customCriterion |
| ARB_init_perl_interface | ED4_area_manager | LinePart | SepBaseFreq (chartable) |
|
| ARB_seqtree | ED4_base | LineQueue | Seq |
| ARB_seqtree_root | ED4_base_position | LineReader | SeqInfo | db_interrupt_data |
| ARB_TIME | ED4_block | LineVector (AW) | SeqPart | debug_asserter (arb_test) |
| ARB_timeout | ED4_block_operator | Link | Sequence | dereference |
| ARB_timestamp | ED4_bracket_terminal | List | SequenceAliData | dereference< T * > |
| ARB_tree_info | ED4_cb_list | ListDisplayRow | SequenceBuffer | dereference< T *const > |
| ARB_tree_predicate | ED4_consensus_sequence_terminal | LoadSaveSearchParam | SequenceHandler | di_protdist |
| ArbCachedString | ED4_container | LocallyModify | SequenceIterator | diff_params |
| ARBDB_memory_manager | ED4_coords | Location | SequencePosition | different_types |
| ArbDBWriter | ED4_cursor | LocationEditor | SetOnce | difflineMode |
| ArbImporter | ED4_CursorShape | LongBranchMarker | Setup (iupac) | disallow_type |
| ArbMatchResult | ED4_device_manager | LooseBases | SetVariables | dot_insert_stat |
| ArbMatchResultsManager | ED4_dragNdrop_info | LowDataCheck | ShaderPlugin | double_xfer |
| ArbParsimony | ED4_Edit_String |
| ShallBeDeleted | doublecomplex |
| ArbPC_Context | ED4_extension | ShowHelix_cd | drawdata |
| ArbPM_Context | ED4_foldable | MackeParser | SimpleFormatReader | dt_bondssum |
| ArbProbe | ED4_folding_line | MackeReader | SimpleLocation |
|
| ArbProbeCollection | ED4_group_manager | MacroExitor | SimpleRoot |
| ArbProbeMatchWeighting | ED4_highlighted_entry | MacroRecorder | SimpleTester | ed_key |
| ArbRefCount | ED4_host | MacroTalkSleep | SingleDictTree | epsilon_similar (arb_test) |
| ArbStringCache | ED4_line_terminal | MarkedPrefixes | SizeAwarable | equals |
| ArbTcpDat | ED4_list | MarkerDisplay | SizeAwareRoot | expectation (arb_test) |
| ArbWriteFile_Context | ED4_list_elem | MarkerIdentifier | SizedBufferPtr | expectation_group (arb_test) |
| ArgParser | ED4_LocalWinContext | MarkerPosition | SizedCstr | export_environment |
| AttributeParser | ED4_manager | MarkerXPos | SizeOverOne | export_format |
| AutoMatchSettings | ED4_MostRecentWinContext | MaskCommandDefinition | SlaveCanvas | export_sequence_data |
| AvailableFieldScanner | ED4_move_info | MasterCanvas | SlaveCanvas_internal |
|
| AW_area_management | ED4_multi_name_manager | MasterSequence | SmartPtr |
| AW_at | ED4_multi_sequence_manager | MatchingOligo | Smoother | fallbacks |
| AW_at_auto | ED4_multi_species_manager | MatchRequest | Socinf | filter_params |
| AW_at_maxsize | ED4_name_manager | MatrixDisplay | Sonde | for_data |
| AW_at_size | ED4_objspec | MatrixOrder | Sondentopf | format_props |
| AW_at_storage | ED4_objspec_registry | MaxBond | SortByTopo | formatTable |
| AW_awar | ED4_orf_terminal | MemBlock | SortClusterIDsBy | fragment |
| AW_buttons_struct | ED4_plugin_host | MemBlockManager | SortedFreq |
|
| AW_cb | ED4_reference | MemDump | Spec (TreeAdmin) |
| AW_CL_castableType | ED4_reference_terminals | Memory | SpeciesConcatenateList | g_b_undo_entry |
| AW_click_cd | ED4_remap | MergeFieldScanner | SpeciesFlag | g_b_undo_gbd |
| AW_clicked_box | ED4_root | MessageAttachable | SpeciesFlags | g_b_undo_header |
| AW_clicked_element | ED4_root_group_manager | MessageSpamFilter | SpeciesInTwoTrees | g_b_undo_list |
| AW_clicked_line | ED4_scroll_links | MetaInfo | SpeciesMergeList | g_b_undo_mgr |
| AW_clicked_text | ED4_scroll_picture | MetaTag | SpeciesSelector | gb_buffer |
| AW_clip_scale_stack | ED4_scrolled_rectangle | MetaTagTranslator | SpeciesSpace | gb_cache |
| AW_clipable | ED4_SearchPosition | MG_MacroExitor | SpecificAliData | gb_cache_entry |
| AW_common | ED4_SearchResults | MG_remap | SpecificGap | gb_callback |
| AW_common_Xm | ED4_seq_colors | MG_remaps | SpecSet | gb_callback_list |
| AW_DB_selection | ED4_sequence_manager | Mismatches | SpecSetRegistry | gb_compress_list |
| AW_device | ED4_sequence_terminal | MismatchWeights | Splits | gb_compress_tree |
| AW_device_size | ED4_species_pointer | MITuple | Spoolable | gb_data_base_type_union |
| AW_event | ED4_terminal | MO_Liste | SpoolableColor | gb_data_base_type_union2 |
| AW_font_group | ED4_TerminalPredicate | MO_Mismatch | SpoolableString | gb_data_list |
| AW_font_limits | ED4_text_terminal | ModRLimit | SPOOLER | gb_db_extended |
| AW_font_overlap | ED4_update_info | MostLikelySeq | SQ_ambiguities | gb_exitfun |
| AW_GC | ED4_WinContext | MostUsedPos | SQ_GroupData | gb_extern_data |
| AW_GC_config | ED4_WinContextFree | MP_list_elem | SQ_GroupData_Impl | gb_extern_data2 |
| AW_gc_manager | ED4_window | MP_Main | SQ_GroupData_RNA | gb_flag_types |
| AW_GC_set | ED4_work_info | MP_Window | SQ_helix | gb_flag_types2 |
| AW_GC_Xm | EdgeBetween | MultiFastaWriter | SQ_physical_layout | gb_flag_types3 |
| AW_helix | EdgeChain | MultiFieldReader | SQ_weights | gb_header_flags |
| AW_hsv | EdgeDistances | Multiroot | ST_base_vector | gb_header_list |
| AW_option_menu_struct | EdgeFinder | Multitype | ST_Container | gb_hierarchy_callback |
| AW_rgb16 | EditedTerminal | MutableBoundItemSel | ST_ML | gb_hierarchy_callback_list |
| AW_rgb_diff | EG2PS_data | MutableItemSelector | ST_rate_matrix | gb_hierarchy_location |
| AW_rgb_normalized | EmblImporter | MutationsPerSite | Stack | gb_if_entries |
| AW_root | EmblParser | Mutex | StackFrameData | gb_index_files |
| AW_root_cblist | Emblref |
| StateStack | gb_Key |
| AW_root_Motif | EmblSwissprotReader | StaticCode (arb_test) | gb_local_data |
| AW_scalar | EntryRemover | NA_Alignment | StaticData | gb_map_header |
| AW_ScalerTransformer | Error | NA_Sequence | StorableSelectionList | gb_pending_callbacks |
| AW_screen_area | ErrorOr | NamedCommand | Store_species | gb_quick_save |
| AW_selection | ExecutingMacro | NameInformation | StrandPositionData | gb_scandir |
| AW_selection_list | EXP_item_type_species_selector | Namelist | StrictlyAliased_BasePtrRef | gb_server_data |
| AW_selection_list_entry | ExplicitQueryKey | NameServerConnection | StrictlyTypedCallback | gb_transaction_save |
| AW_selection_list_iterator | ExplicitRange | NestingLevelKey | StringParser | gb_triggered_callback |
| AW_simple_device | ExplicitReference | NN_GlobalData | Struct2Dinfo | gb_user |
| AW_size_tracker | ExportFieldScanner | NoCaseCmp | Struct2Dplus3D | gbb_Cluster |
| AW_stylable | ExportFieldTracker | Node | Struct3Dinfo | gbb_data |
| AW_subset_selection | ExportFormatInfo (SEQIO) | Node_ID_Labeler | Structure3D | gbb_freedata |
| AW_timer_cb_struct | Expression | NodeInsertOrder | StrUniquifier | gbcmc_comm |
| AW_toggle_field_struct |
| NodeLeafDistance | Subinfo | gbcms_create |
| AW_trackPositions_device | NodeMarkers | SuppressOutput | gbcms_delete_list |
| AW_trackSpecies_device | FailedAt | NodeStack | SymmetricMatrixMapper | gbdata_offset |
| AW_var_target | FamilyFinder | NodeState | SymPart | gbdByKey |
| AW_widget_refresh_cb | FamilyList | NodeTextBuilder |
| gbl_param (GBL_IMPL) |
| AW_widget_value_pair | FamilyStat | Noncopyable | gbm_data |
| AW_window | FastAlignInsertion | NoSuchCommand | Tab | gbm_pool |
| AW_window_menu | FastAlignReport | Not | TaggedContentParser | gbm_table |
| AW_window_menu_modes | FastSearchOccurrence | NoTuple | TargetGroup | gbs_hash_entry |
| AW_window_menu_modes_opengl | FastSearchSequence | NSONS | TargetItem | gbt_renamed |
| AW_window_message | Feature | NT_global | Test | gc_desc |
| AW_window_Motif | FeatureLine | NT_MacroExitor | TextRef | gc_range |
| AW_window_simple_menu | FieldReader | NT_NODE | TimedCombines | gde_database_access |
| AW_world | FieldSelDef | NT_TreeShader | TimeStamp | gde_iteminfo |
| AW_xfig | FieldTracker | NtreeCommandLine | Token | gene_container_changed_cb_data |
| AW_xfig_line | File_selection | Nuc_Group (iupac) | TokenList | gene_part_pos |
| AW_xfig_pos | FileContent | NullTracker | TokenListBlock | gene_struct |
| AW_xfig_text | FileWatch |
| TokenMatcher | gl_struct |
| AW_zoomable | FileWriter | TopologyShader | group_folding |
| AWT_auto_refresh | FillStyle (AW) | O_gbdByKey | TrackedAwarChange | group_match (arb_test) |
| AWT_canvas | FilterDefinition | Oligo | TrackedFile | group_scaling |
| AWT_Codon_Code_Definition | FilteredExport | OligoRegistry | TrackedFiles |
|
| AWT_command_data | FINAL_TYPE | OptiPerfMeter | Translator |
| AWT_config | FINAL_TYPE (arb_test) | OrgInfo | TransportedData (FieldTransfer) | has_base_at |
| AWT_config_definition | Flag | Ostring | TransTables | has_been_deleted |
| AWT_config_mapping_def | FlagLayout | OutgroupMatcher | TraversalHitLimit | has_id |
| AWT_configuration | FormatReader | Output | TREE_canvas | hash |
| AWT_configuration_selection | FormattedFile | OutputFormat | TREE_canvas_registry | hash_entry |
| AWT_distance_meter | Formatter |
| TreeAwarRegistry | hasSequence |
| AWT_graphic | FormatTester | TreeContainer | hasType |
| AWT_graphic_event | ForwardParamT | Package | TreeInfo | helix_pair_def |
| AWT_graphic_exports | ForwardParamT< T * > | PaintData | TreeLabeler | helix_stack |
| AWT_graphic_parsimony | ForwardParamT< void > | PaintedNode | TreeNode | hits_sort_params |
| AWT_graphic_tree | FoundGroup | Pair | TreeOrderedSpecies | huffmann_list |
| AWT_graphic_tree_group_state | FrameStack | PaperFormat | TreeParts |
|
| AWT_nonDB_graphic | FullDictTree | Parameter | TreePositionLookup |
| AWT_PDP | Function | Params | TreeReader | icilist |
| AWT_predefined_config | Function< RT, P1, P2, void > | ParentCache | TreeRelativePosition | import_format |
| AWT_registered_itemtype | Function< RT, P1, void, void > | ParentGroupNameQueryKey | TreeRoot | import_match |
| AWT_scaled_font_limits | Function< RT, void, void, void > | PARS_commands | TripleOffset | indent |
| AWT_translator | FunInfo | ParsedProbeMatch | TSpecSet | indexed_name |
| AWT_tree_selection |
| Parser | TwoLeafs | initial_progress |
|
| PARSIMONY_testenv | Type | initial_selfRef_progress |
| GargChoice | PART | TypedAliData | inlist |
| BackTraceInfo | GB_DbScanner | PartialSequence | TypedDatabaseCallback | is (arb_compile_assertion) |
| BadPositionsOrder | GB_DICTIONARY | Partition | TypedSelectionList | is< true > (arb_compile_assertion) |
| Bakt_Info | GB_HASH | PartitionSize | TypeMap | is_base_of (ARB_type_traits) |
| BaseCounter | GB_initial_transaction | PartitionSpec | TypeOp | is_same (ARB_type_traits) |
| BaseCounts | GB_INTern | PartQueue | TypeOp< T & > | isAbove |
| BaseFrequencies | GB_INTern2 | PartRegistry | TypeOp< T const > | isBelow |
| BaseInverter | GB_INTern_strings | Paup | TypeOp< void > | island |
| BasePosition | GB_INTern_strings2 | PD_formatter | TypeSwitch |
|
| BasicStatus | GB_MAIN_TYPE | PerfTimer | TypeT |
| BestEdge | GB_NUMHASH | PersistantFlag |
| keychar_table |
| BI_ecoli_ref | GB_previousSecurityLevel | PersistentNameServerConnection | known_enum |
| BI_helix | GB_securityLevel | PH_display | UniqueNameDetector |
|
| BI_helix_entry | GB_shell | PH_display_status | UnitPair |
| BI_pairdef | GB_shell4perl | PH_filter | UnitPtr | less_DistinctPosRange |
| BitField | GB_test_shell_closed | PH_NEIGHBOUR_DIST | UnitTest_simple | link_tree_data |
| BitMask | GB_topSecurityLevel | PH_NEIGHBOURJOINING | UnitTester | list_elem |
| BitRange | GB_transaction | PH_root | UseAnyTree | locinfo (arb_test) |
| BitsBelowBit | GBCONTAINER | PH_used_windows | UsedColor | lt_field |
| BitsBelowBit< 31 > | GBDATA | Phaser | UserActionTracker | lt_probe |
| BitsBelowBit< 32 > | GBENTRY | PHDATA | UserFrame | ltByArbName |
| Bitvector | GBENTRY_memory | PlotParam | UserlandCheck | ltByInternalName |
| Block | GBL_call_env | PlugIn | UseTreeRoot | ltNonOverlap |
| BootstrapConfig | GBL_command_arguments | PO_Less |
|
|
| BoundActionTracker | GBL_command_definition | POS_TREE1 |
| BoundTreeAwarCallback | GBL_command_lookup_table | POS_TREE2 | Validity | mark_nontree_cb_data |
| BoundWindowCallback | GBL_custom_command_lookup_table | PosGene | ValueCounter | match_expectation (arb_test) |
| BranchLinewidthScaler | GBL_env | Position (AW) | ValueTuple | matchable (arb_test) |
| BranchMover | GBL_maybe_itemless_call_env | PositionPair | Vardesc | matcher (arb_test) |
| BranchScaler | GBL_simple_call_env | PosRange | VarianceSampler | merge_scheme |
| BranchWindow | GBL_streams | PrefixIterator | VarUpdateInfo | mp_gl_struct |
| BufferedFileReader | GBS_regex | PrefixProbabilities | Vector (AW) | TreeNode::multifurc_limits |
| BufferedPipeReader | GBS_string_matcher | PrimerDesign | Vector3 |
|
| BufferPtr | GBS_strstruct | PrintMaybe | ViaFtsTransporter |
|
| GBT_config | ProbeCandidates |
| name_value_pair |
| GBT_config_item | ProbeCollDisplay | nameOrder |
| Cache (cache) | GBT_config_parser | ProbeCommonSettings | Warnings | nestable |
| CacheEntry (cache) | GcgCommentWriter | ProbeIterator | WeightedFilter | nestable (ArbProgress) |
| CacheHandle (cache) | GcgWriter | ProbeMatch_impl | Word | no_counter |
| Callback_FFV | GEN_command_mode_param | ProbeMatchEventParam | WrapMode | node |
| Callback_FVF | GEN_create_map_param | ProbeMatchParser | Writer | null_counter |
| Callback_FVV | GEN_extract_mode_param | ProbeMatchSettings | WriteRule (FieldTransfer) | null_progress |
| Callback_VV | GEN_gene | ProbeOccurrence |
| numhash_entry |
| CallbackData | GEN_graphic | ProbeValuation |
|
| CallbackList | GEN_item_type_species_selector | ProgramError | XCmdType |
| Candidate | GEN_map_manager | PromptData | Xfig_Eater | oligo_cmp_abs |
| CanvasRef | GEN_map_window | Prototype | XML_Comment | oligo_cmp_rel |
| CentigradePos | GEN_NodeTextBuilder | PS_BitMap | XML_Node | oligo_comparator |
| ChainEntryBuffer | GEN_position | PS_BitSet | XML_Text | olist |
| ChainIteratorStage1 | GEN_position_mem_handler | PS_Callback | XString | output |
| ChainIteratorStage2 | GEN_root | PS_Candidate |
|
|
| CharCounter | GEN_unique_param | PS_FileBuffer |
| CharPredicate | GEN_update_info | PS_Node | _fstruct | parameters |
| CharPtrArray | GenbankParser | PS_Probe | _GLwDrawingAreaClassPart | pfold_mem_handler |
| CharRangeTable | GenbankReader | PT_compressed | _GLwDrawingAreaClassRec | pngInfo |
| CheckedConsistencies | GenbankRef | PT_dump_loc | _GLwDrawingAreaRec | pngRawInfo |
| ChecksumCollector | GenebankImporter | PT_FamilyFinder | ChainIteratorStage1::_U::_L | predicate (arb_test) |
| ChildLookupTable | GenePositionMap | PT_FF_comImpl | ChainIteratorStage1::_U::_S | predicate_description (arb_test) |
| CLI | Generation | PT_long_chain_header | _xfstruct | predicate_matcher (arb_test) |
| ClickedElement | GenerationDuplicates | PT_selection |
| preserve_para |
| ClickedTarget | GetMatchesContext | PT_short_chain_header | prettyopts |
| ClientActionTracker | GfileFormat | PT_statistic | acceptAnyTerminal | probe |
| Cluster | Globals | PT_Traversal | acceptConsensusTerminal | probe_combi_statistic |
| Clusterer | GlobalStringBuffers | PTserverConnection | adfiltercbstruct | probe_input_data |
| ClustersData | GLwDrawingAreaCallbackStruct |
| aisc_bytes_list | probe_statistic_struct |
| Code | GLwDrawingAreaPart | aisc_com | probe_struct_global |
| Codon_Group | Gmenu | QuadraticThreshold | aisc_hash_node | probe_tabs |
| ColorGroupDef | GmenuItem | QueriedGroups | aisc_static_set_mem | promotion |
| ColorMap | GmenuItemArg | QueryExpr | ali_aligner_cell | pt_global |
| ColorRGBf | Group | QueryKey | ali_aligner_column | ptnd_chain_count_mishits |
| Column | GroupAIDkey | QueryTarget | ali_aligner_dellist |
|
| ColumnQualityInfo | GroupBuilder |
| ali_aligner_dellist_elem |
| ColumnStat | GroupChanges | ali_aligner_last_cell | query_spec (QUERY) |
| ColumnWidths | GroupCluster | RandomNumberGenerator | ali_aligner_result | queued_line |
| CombinableSeq | GroupFoldedKey | Range | ali_aligner_tripel |
|
| CombinedPosInfo | GroupInfo | RangeList | ali_family_member |
| Command | GroupIterator | RatioLimits | ali_pathmap_up_pointer | remote_awars |
| CommandOutput | GroupKeeledKey | RB_INFO | ali_prealigner_approx_element | remove_const (ARB_type_traits) |
| CommentSkippingFileBuffer | GroupMarkedKey | RDP_comments | ali_prealigner_approximation | remove_const< const T > (ARB_type_traits) |
| CompactedSequence | GroupMatchScorer | ReadableDataLoc | ali_prealigner_cell | remove_cv (ARB_type_traits) |
| CompactedSubSequence | GroupNameQueryKey | Reader | ali_prealigner_column | remove_volatile (ARB_type_traits) |
| CompareAlpha | GroupPenalty | ReadRule (FieldTransfer) | ali_prealigner_mask | remove_volatile< volatile T > (ARB_type_traits) |
| | | | |
