|
| CompareByLength | GroupRename_callenv | RealignAttempt | apd_sequence |
| Complement | GroupSearch | Realigner | arb_handlers |
| AbsLoc | ComplementLocation | GroupSearchCommon | RecalcNeeded | arb_params |
| ACI_Labeler | CompountT | GroupSizeKey | RecordingMacro | arb_prm_struct |
| AdaptedAlignmentTransporter | CompountT< R()> | GroupUIdata | Rectangle (AW) | arb_progress |
| AISC_Object | CompountT< R(P1)> | GroupXfer_callenv | RefContainer | arb_r2a_pro_2_nuc |
| ALI_ALIGNER | CompountT< R(P1,...)> | GroupZombiesKey | Reference | arb_r2a_pro_2_nucs |
| ALI_ALIGNER_CONTEXT | CompountT< T & > |
| References | arb_status_implementation |
| ALI_ARBDB | CompountT< T * > | ReferringEntriesHandler (RefEntries) | arb_suppress_progress |
| ALI_GLOBAL | CompountT< T C::* > | HasLevelSmallerThan | RefPtr | asserter (arb_test) |
| ALI_MAP | CompountT< T[]> | HasntCurrentClusterPrefix | Refs | auto_delete_array_ptr |
| ALI_NORM_SEQUENCE | CompountT< T[N]> | Header | RefSelector (RefEntries) | auto_delete_ptr |
| ALI_PATHMAP | CompressionRoot | HeaderList | RegExpr | auto_free_ptr |
| ALI_PREALIGNER | ConfigDefinition | HelixAlignmentQuality | RegFieldSelection | aw_stg_struct |
| ALI_PREALIGNER_CONTEXT | ConfigDeleter | HelixNrInfo | RegMatch | aw_toggle_data |
| ALI_PROFILE | ConfigManagerConversionDef | Helpfile | RequiresActionTracker | aw_xargs |
| ALI_PROFILE_CONTEXT | ConfigMapping | Hit | ResourceStack | awar_vars |
| ALI_PT | ConfigModifier | HitCounter | RNA3D_Global | awModDef |
| ALI_PT_CONTEXT | ConfigRenamer | Host (ARB_type_traits) | RNA3D_Graphics | awt_assignment |
| ALI_selection | Consensus | Hs_struct | RootAsWindowCallback | awt_check_box |
| ALI_sellst_spec | ConsensusBuildParams |
| RootSynchronizer | awt_hotkeys |
| ALI_SEQUENCE | ConsensusReference | RSpecSet | awt_input_field |
| ALI_SUB_SOLUTION | ConsensusTree | ID_checker | Rule (FieldTransfer) | awt_input_handler |
| ALI_TARRAY | ConsensusTreeBuilder | IfThenElseType | RulerScaler | awt_input_mask_global |
| ALI_TLIST | ConstParamT | IfThenElseType< false, T, F > | RuleSet (FieldTransfer) | awt_input_mask_id_list |
| ALI_TLIST_ELEM | ConstParamT< T * > | IfThenElseType< true, T, F > |
| awt_item_type_selector |
| ALI_TSTACK | ConstParamT< void > | Importer | awt_linked_to_item |
| AliAdmin | ConstStrArray | ImportFieldScanner | S_cfgLine | awt_mask_action |
| AliApplicable | ConsumeUDC | ImportSession | S_Frand | awt_mask_awar_item |
| AliAutoFormatCommand | ConsumeUDC< T, false > | ImportTestData | S_RNS | awt_mask_item |
| AliChange | ConsumeUDC< void, convert_possible > | InfoWindow | S_Spreading | awt_numeric_input_field |
| AliCompositeCommand | Convaln_exception | InfoWindowRegistry | SAI_graphic | awt_radio_button |
| AliData | ConvertibleData | InputFileError | SAI_selection | awt_string_handler |
| AliDataSlice | Counted | InputFormat | SAI_sellst_spec | awt_text_viewport |
| AliDeleteCommand | CurrSpecies | InsertData | SAI_string_builder | awt_variable |
| AliEditCommand | CursorPos | Insertions | SaiAciApplicator | awt_viewport |
| AliEditor |
| InsertPerfMeter | SaiBoolchainOperator | awXKeymap |
| AliEntryCounter | Int | SaiBoolRule | awXKeymap_modfree |
| AlignBuffer | Data | Interpreter | SaiCalcEnv |
|
| AlignDataAccess | DataLoc | IRS_data | SaiCalculator |
| Aligner | DB_scalable | IsCallback | SaiOperator | binop_pair |
| Alignment | DBerror | IsClassT | Sampler | bitcounter |
| AlignmentReference | DBID | IsEnumT | Scaler | bytestring |
| AlignmentTransporter (FieldTransfer) | DbQuery (QUERY) | IsFunctionT | ScopedTransporter |
|
| AlignParams | DbScanner | IsFundaT | SCP_Less |
| AliInsertCommand | DBwriter | IsSpecificCallback | ScrollSynchronizer | cached_taxonomy |
| AliNameAndType | DecisionTree | IsSpecificHierarchyCallback | SearchAwarList | case_op |
| AliView | DeconstructedTree | Item | SearchedTree | PT_statistic::chain_head_mem |
| Ambiguity (chartable) | DefinedCommands | ItemClonedByRuleSet (FieldTransfer) | SearchFIFO | charpLess |
| AN_gl_struct | DelayReshade | Itemfield_Selection | SearchParameter | cilist |
| Angle (AW) | Deletable | ItemFieldShader | SearchRelativeParams | client_msg_queue |
| AngleBuffer | DendroSubtreeLimits | ItemShader | SearchRelativesReference | cllist |
| AP_combinableSeq | DepthMarker |
| SearchSettings | cmp_candidates |
| AP_DefaultTreeShader | Desco (validNames) | SearchTree | cmp_Rectangles |
| AP_filter | DesignTargets | JoinedLocation | SearchTreeNode | colorset_data |
| AP_main | DI_ENTRY |
| SEC_base | column |
| AP_matrix | DI_GLOBAL_MATRIX | SEC_base_iterator | common_filter_params |
| AP_pos_var | DI_MATRIX | Keeper | SEC_base_part | comparator |
| AP_rates | Dict | KeyInfo | SEC_base_part_iterator | compare_by_criteria |
| AP_sequence | DictData | KeySorter | SEC_bond_def | complex |
| AP_sequence_simple_protein | DictTree | KL_params | SEC_constrainted | consensus_result |
| AP_smatrix | DiffLines | KL_Settings | SEC_db_interface | containing (arb_test) |
| AP_STACK | DisplayFormat |
| SEC_dbcb | copy (arb_test) |
| AP_subtree | DistanceCounter | SEC_displayParams | copy< const char * > (arb_test) |
| AP_tree | Distributor | Label | SEC_drawn_positions | copy< copy< T > > (arb_test) |
| AP_tree_edge | DNA_Table | Lazy | SEC_oriented | count_mutpsite |
| AP_tree_folding | DontTransportAlignment | LazyAliData | SEC_region | count_nothing |
| AP_tree_members | Dots | LazyFloat | SEC_root | count_unweighted |
| AP_tree_root | Dragged | LazyPersistantFlag | SEC_segment_iterator | count_weighted |
| AP_TreeShader | DragNDrop | LeafRelation | SEC_seq_data | counter (ArbProgress) |
| AP_userdef_matrix | DupCriteria | TreeNode::LengthCollector | SEC_strand_const_iterator | counter |
| AP_weights | DuplicateLinkFilter | LikelihoodRanges | SEC_strand_iterator | cursorpos |
| ARB_countedTree | DupNameCriterion | LimitedTime | SEC_structure_toggler | custom_dealloc_ptr |
| ARB_edge |
| LimitTracker | SelectedDatabase | customCriterion |
| ARB_ERROR | LineAttachedMessage | SelectionListSpec |
|
| ARB_inc_sleep | ED4_abstract_group_manager | LineBuf | SepBaseFreq (chartable) |
| ARB_init_perl_interface | ED4_abstract_sequence_terminal | LinePart | Seq | db_interrupt_data |
| ARB_seqtree | ED4_area_manager | LineQueue | SeqInfo | debug_asserter (arb_test) |
| ARB_seqtree_root | ED4_base | LineReader | SeqPart | dereference |
| ARB_TIME | ED4_base_position | LineVector (AW) | Sequence | dereference< T * > |
| ARB_timeout | ED4_block | Link | SequenceAliData | dereference< T *const > |
| ARB_timestamp | ED4_block_operator | List | SequenceBuffer | di_protdist |
| ARB_tree_info | ED4_bracket_terminal | ListDisplayRow | SequenceHandler | diff_params |
| ARB_tree_predicate | ED4_cb_list | LoadSaveSearchParam | SequenceIterator | different_types |
| ArbCachedString | ED4_consensus_sequence_terminal | LocallyModify | SequencePosition | difflineMode |
| ARBDB_memory_manager | ED4_container | Location | SetOnce | disallow_type |
| ArbDBWriter | ED4_coords | LocationEditor | Setup (iupac) | dot_insert_stat |
| ArbImporter | ED4_cursor | LongBranchMarker | SetVariables | double_xfer |
| ArbMatchResult | ED4_CursorShape | LooseBases | ShaderPlugin | doublecomplex |
| ArbMatchResultsManager | ED4_device_manager | LowDataCheck | ShallBeDeleted | drawdata |
| ArbParsimony | ED4_dragNdrop_info |
| ShowHelix_cd | dt_bondssum |
| ArbPC_Context | ED4_Edit_String | SimpleFormatReader |
|
| ArbPM_Context | ED4_extension | MackeParser | SimpleLocation |
| ArbProbe | ED4_foldable | MackeReader | SimpleRoot | ed_key |
| ArbProbeCollection | ED4_folding_line | MacroExitor | SimpleTester | epsilon_similar (arb_test) |
| ArbProbeMatchWeighting | ED4_group_manager | MacroRecorder | SingleDictTree | equals |
| ArbRefCount | ED4_highlighted_entry | MacroTalkSleep | SizeAwarable | expectation (arb_test) |
| ArbStringCache | ED4_host | MarkedPrefixes | SizeAwareRoot | expectation_group (arb_test) |
| ArbTcpDat | ED4_line_terminal | MarkerDisplay | SizedBufferPtr | export_environment |
| ArbWriteFile_Context | ED4_list | MarkerIdentifier | SizedCstr | export_format |
| ArgParser | ED4_list_elem | MarkerPosition | SizeOverOne | export_sequence_data |
| AttributeParser | ED4_LocalWinContext | MarkerXPos | SlaveCanvas |
|
| AutoMatchSettings | ED4_manager | MaskCommandDefinition | SlaveCanvas_internal |
| AvailableFieldScanner | ED4_MostRecentWinContext | MasterCanvas | SmartPtr | fallbacks |
| AW_area_management | ED4_move_info | MasterSequence | Smoother | filter_params |
| AW_at | ED4_multi_name_manager | MatchingOligo | Socinf | for_data |
| AW_at_auto | ED4_multi_sequence_manager | MatchRequest | Sonde | format_props |
| AW_at_maxsize | ED4_multi_species_manager | MatrixDisplay | Sondentopf | formatTable |
| AW_at_size | ED4_name_manager | MatrixOrder | SortByTopo | fragment |
| AW_at_storage | ED4_objspec | MaxBond | SortClusterIDsBy |
|
| AW_awar | ED4_objspec_registry | MemBlock | SortedFreq |
| AW_buttons_struct | ED4_orf_terminal | MemBlockManager | Spec (TreeAdmin) | g_b_undo_entry |
| AW_cb | ED4_plugin_host | MemDump | SpeciesConcatenateList | g_b_undo_gbd |
| AW_CL_castableType | ED4_reference | Memory | SpeciesFlag | g_b_undo_header |
| AW_click_cd | ED4_reference_terminals | MergeFieldScanner | SpeciesFlags | g_b_undo_list |
| AW_clicked_box | ED4_remap | MessageAttachable | SpeciesInTwoTrees | g_b_undo_mgr |
| AW_clicked_element | ED4_root | MessageSpamFilter | SpeciesMergeList | gb_buffer |
| AW_clicked_line | ED4_root_group_manager | MetaInfo | SpeciesSelector | gb_cache |
| AW_clicked_text | ED4_scroll_links | MetaTag | SpeciesSpace | gb_cache_entry |
| AW_clip_scale_stack | ED4_scroll_picture | MetaTagTranslator | SpecificAliData | gb_callback |
| AW_clipable | ED4_scrolled_rectangle | MG_MacroExitor | SpecificGap | gb_callback_list |
| AW_common | ED4_SearchPosition | MG_remap | SpecSet | gb_compress_list |
| AW_common_Xm | ED4_SearchResults | MG_remaps | SpecSetRegistry | gb_compress_tree |
| AW_DB_selection | ED4_seq_colors | Mismatches | Splits | gb_data_base_type_union |
| AW_device | ED4_sequence_manager | MismatchWeights | Spoolable | gb_data_base_type_union2 |
| AW_device_size | ED4_sequence_terminal | MITuple | SpoolableColor | gb_data_list |
| AW_event | ED4_species_pointer | MO_Liste | SpoolableString | gb_db_extended |
| AW_font_group | ED4_terminal | MO_Mismatch | SPOOLER | gb_exitfun |
| AW_font_limits | ED4_TerminalPredicate | ModRLimit | SQ_ambiguities | gb_extern_data |
| AW_font_overlap | ED4_text_terminal | MostLikelySeq | SQ_GroupData | gb_extern_data2 |
| AW_GC | ED4_update_info | MostUsedPos | SQ_GroupData_Impl | gb_flag_types |
| AW_GC_config | ED4_WinContext | MP_list_elem | SQ_GroupData_RNA | gb_flag_types2 |
| AW_gc_manager | ED4_WinContextFree | MP_Main | SQ_helix | gb_flag_types3 |
| AW_GC_set | ED4_window | MP_Window | SQ_physical_layout | gb_header_flags |
| AW_GC_Xm | ED4_work_info | MultiFastaWriter | SQ_weights | gb_header_list |
| AW_helix | EdgeBetween | MultiFieldReader | ST_base_vector | gb_hierarchy_callback |
| AW_hsv | EdgeChain | Multiroot | ST_Container | gb_hierarchy_callback_list |
| AW_option_menu_struct | EdgeDistances | Multitype | ST_ML | gb_hierarchy_location |
| AW_rgb16 | EdgeFinder | MutableBoundItemSel | ST_rate_matrix | gb_if_entries |
| AW_rgb_diff | EditedTerminal | MutableItemSelector | Stack | gb_index_files |
| AW_rgb_normalized | EG2PS_data | MutationsPerSite | StackFrameData | gb_Key |
| AW_root | EmblImporter | Mutex | StateStack | gb_local_data |
| AW_root_cblist | EmblParser |
| StaticCode (arb_test) | gb_map_header |
| AW_root_Motif | Emblref | StaticData | gb_pending_callbacks |
| AW_scalar | EmblSwissprotReader | NA_Alignment | StorableSelectionList | gb_quick_save |
| AW_ScalerTransformer | EntryRemover | NA_Sequence | Store_species | gb_scandir |
| AW_screen_area | Error | NamedCommand | StrandPositionData | gb_server_data |
| AW_selection | ErrorOr | NameInformation | StrictlyAliased_BasePtrRef | gb_transaction_save |
| AW_selection_list | ExecutingMacro | Namelist | StrictlyTypedCallback | gb_triggered_callback |
| AW_selection_list_entry | EXP_item_type_species_selector | NameServerConnection | StringParser | gb_user |
| AW_selection_list_iterator | ExplicitQueryKey | NestingLevelKey | Struct2Dinfo | gbb_Cluster |
| AW_simple_device | ExplicitRange | NN_GlobalData | Struct2Dplus3D | gbb_data |
| AW_size_tracker | ExplicitReference | NoCaseCmp | Struct3Dinfo | gbb_freedata |
| AW_stylable | ExportFieldScanner | Node | Structure3D | gbcmc_comm |
| AW_subset_selection | ExportFieldTracker | Node_ID_Labeler | StrUniquifier | gbcms_create |
| AW_timer_cb_struct | ExportFormatInfo (SEQIO) | NodeInsertOrder | Subinfo | gbcms_delete_list |
| AW_toggle_field_struct | Expression | NodeLeafDistance | SuppressOutput | gbdata_offset |
| AW_trackPositions_device |
| NodeMarkers | SymmetricMatrixMapper | gbdByKey |
| AW_trackSpecies_device | NodeStack | SymPart | gbl_param (GBL_IMPL) |
| AW_var_target | FailedAt | NodeState |
| gbm_data |
| AW_widget_refresh_cb | FamilyFinder | NodeTextBuilder | gbm_pool |
| AW_widget_value_pair | FamilyList | Noncopyable | Tab | gbm_table |
| AW_window | FamilyStat | NoSuchCommand | TaggedContentParser | gbs_hash_entry |
| AW_window_menu | FastAlignInsertion | Not | TargetGroup | gbt_renamed |
| AW_window_menu_modes | FastAlignReport | NoTuple | TargetItem | gc_desc |
| AW_window_menu_modes_opengl | FastSearchOccurrence | NSONS | Test | gc_range |
| AW_window_message | FastSearchSequence | NT_global | TextRef | gde_database_access |
| AW_window_Motif | Feature | NT_MacroExitor | TimedCombines | gde_iteminfo |
| AW_window_simple_menu | FeatureLine | NT_NODE | TimeStamp | gene_container_changed_cb_data |
| AW_world | FieldReader | NT_TreeShader | Token | gene_part_pos |
| AW_xfig | FieldSelDef | NtreeCommandLine | TokenList | gene_struct |
| AW_xfig_line | FieldTracker | Nuc_Group (iupac) | TokenListBlock | gl_struct |
| AW_xfig_pos | File_selection | NullTracker | TokenMatcher | group_folding |
| AW_xfig_text | FileContent |
| TopologyShader | group_match (arb_test) |
| AW_zoomable | FileWatch | TrackedAwarChange | group_scaling |
| AWT_auto_refresh | FileWriter | O_gbdByKey | TrackedFile |
|
| AWT_canvas | FillStyle (AW) | Oligo | TrackedFiles |
| AWT_Codon_Code_Definition | FilterDefinition | OligoRegistry | Translator | has_base_at |
| AWT_command_data | FilteredExport | OptiPerfMeter | TransportedData (FieldTransfer) | has_been_deleted |
| AWT_config | FINAL_TYPE | OrgInfo | TransTables | has_id |
| AWT_config_definition | FINAL_TYPE (arb_test) | Ostring | TraversalHitLimit | hash |
| AWT_config_mapping_def | Flag | OutgroupMatcher | TREE_canvas | hash_entry |
| AWT_configuration | FlagLayout | Output | TREE_canvas_registry | hasSequence |
| AWT_configuration_selection | FormatReader | OutputFormat | TreeAwarRegistry | hasType |
| AWT_distance_meter | FormattedFile |
| TreeContainer | helix_pair_def |
| AWT_graphic | Formatter | TreeInfo | helix_stack |
| AWT_graphic_event | FormatTester | Package | TreeLabeler | hits_sort_params |
| AWT_graphic_exports | ForwardParamT | PaintData | TreeNode | huffmann_list |
| AWT_graphic_parsimony | ForwardParamT< T * > | PaintedNode | TreeOrderedSpecies |
|
| AWT_graphic_tree | ForwardParamT< void > | Pair | TreeParts |
| AWT_graphic_tree_group_state | FoundGroup | PaperFormat | TreePositionLookup | icilist |
| AWT_nonDB_graphic | FrameStack | Parameter | TreeReader | import_format |
| AWT_PDP | FullDictTree | Params | TreeRelativePosition | import_match |
| AWT_predefined_config | Function | ParentCache | TreeRoot | indent |
| AWT_registered_itemtype | Function< RT, P1, P2, void > | ParentGroupNameQueryKey | TripleOffset | indexed_name |
| AWT_scaled_font_limits | Function< RT, P1, void, void > | PARS_commands | TSpecSet | initial_progress |
| AWT_translator | Function< RT, void, void, void > | ParsedProbeMatch | TwoLeafs | initial_selfRef_progress |
| AWT_tree_selection | FunInfo | Parser | Type | inlist |
|
|
| PARSIMONY_testenv | TypedAliData | is (arb_compile_assertion) |
| PART | TypedDatabaseCallback | is< true > (arb_compile_assertion) |
| BackTraceInfo | GargChoice | PartialSequence | TypedSelectionList | is_base_of (ARB_type_traits) |
| BadPositionsOrder | GB_DbScanner | Partition | TypeMap | is_same (ARB_type_traits) |
| Bakt_Info | GB_DICTIONARY | PartitionSize | TypeOp | isAbove |
| BaseCounter | GB_HASH | PartitionSpec | TypeOp< T & > | isBelow |
| BaseCounts | GB_initial_transaction | PartQueue | TypeOp< T const > | island |
| BaseFrequencies | GB_INTern | PartRegistry | TypeOp< void > |
|
| BaseInverter | GB_INTern2 | Paup | TypeSwitch |
| BasePosition | GB_INTern_strings | PD_formatter | TypeT | keychar_table |
| BasicStatus | GB_INTern_strings2 | PerfTimer |
| known_enum |
| BestEdge | GB_MAIN_TYPE | PersistantFlag |
|
| BI_ecoli_ref | GB_NUMHASH | PersistentNameServerConnection | UniqueNameDetector |
| BI_helix | GB_previousSecurityLevel | PH_display | UnitPair | less_DistinctPosRange |
| BI_helix_entry | GB_securityLevel | PH_display_status | UnitPtr | link_tree_data |
| BI_pairdef | GB_shell | PH_filter | UnitTest_simple | list_elem |
| BitField | GB_shell4perl | PH_NEIGHBOUR_DIST | UnitTester | locinfo (arb_test) |
| BitMask | GB_test_shell_closed | PH_NEIGHBOURJOINING | UseAnyTree | lt_field |
| BitRange | GB_topSecurityLevel | PH_root | UsedColor | lt_probe |
| BitsBelowBit | GB_transaction | PH_used_windows | UserActionTracker | ltByArbName |
| BitsBelowBit< 31 > | GBCONTAINER | Phaser | UserFrame | ltByInternalName |
| BitsBelowBit< 32 > | GBDATA | PHDATA | UserlandCheck | ltNonOverlap |
| Bitvector | GBENTRY | PlotParam | UseTreeRoot |
|
| Block | GBENTRY_memory | PlugIn |
|
| BootstrapConfig | GBL_call_env | PO_Less | manager_window_def |
| BoundActionTracker | GBL_command_arguments | POS_TREE1 | Validity | mark_nontree_cb_data |
| BoundTreeAwarCallback | GBL_command_definition | POS_TREE2 | ValueCounter | match_expectation (arb_test) |
| BoundWindowCallback | GBL_command_lookup_table | PosGene | ValueTuple | matchable (arb_test) |
| BranchLinewidthScaler | GBL_custom_command_lookup_table | Position (AW) | Vardesc | matcher (arb_test) |
| BranchMover | GBL_env | PositionPair | VarianceSampler | merge_scheme |
| BranchScaler | GBL_maybe_itemless_call_env | PosRange | VarUpdateInfo | mp_gl_struct |
| BranchWindow | GBL_simple_call_env | PrefixIterator | Vector (AW) | TreeNode::multifurc_limits |
| BufferedFileReader | GBL_streams | PrefixProbabilities | Vector3 |
|
| BufferedPipeReader | GBS_regex | PrimerDesign | ViaFtsTransporter |
| BufferPtr | GBS_string_matcher | PrintMaybe |
| name_value_pair |
|
| GBS_strstruct | ProbeCandidates | nameOrder |
| GBT_config | ProbeCollDisplay | Warnings | nestable (ArbProgress) |
| Cache (cache) | GBT_config_item | ProbeCommonSettings | WeightedFilter | nestable |
| CacheEntry (cache) | GBT_config_parser | ProbeIterator | Word | no_counter |
| CacheHandle (cache) | GcgCommentWriter | ProbeMatch_impl | WrapMode | node |
| Callback_FFV | GcgWriter | ProbeMatchEventParam | Writer | null_counter |
| Callback_FVF | GEN_command_mode_param | ProbeMatchParser | WriteRule (FieldTransfer) | null_progress |
| Callback_FVV | GEN_create_map_param | ProbeMatchSettings |
| numhash_entry |
| Callback_VV | GEN_extract_mode_param | ProbeOccurrence |
|
| CallbackData | GEN_gene | ProbeValuation | XCmdType |
| CallbackList | GEN_graphic | ProgramError | Xfig_Eater | oligo_cmp_abs |
| Candidate | GEN_item_type_species_selector | PromptData | XML_Comment | oligo_cmp_rel |
| Candidate (preserve) | GEN_map_manager | Prototype | XML_Node | oligo_comparator |
| CanvasRef | GEN_map_window | PS_BitMap | XML_Text | olist |
| CentigradePos | GEN_NodeTextBuilder | PS_BitSet | XString | output |
| ChainEntryBuffer | GEN_position | PS_Callback |
|
|
| ChainIteratorStage1 | GEN_position_mem_handler | PS_Candidate |
| ChainIteratorStage2 | GEN_root | PS_FileBuffer | _fstruct | parameters |
| CharCounter | GEN_unique_param | PS_Node | _GLwDrawingAreaClassPart | pfold_mem_handler |
| CharPredicate | GEN_update_info | PS_Probe | _GLwDrawingAreaClassRec | pngInfo |
| CharPtrArray | GenbankParser | PT_compressed | _GLwDrawingAreaRec | pngRawInfo |
| CharRangeTable | GenbankReader | PT_dump_loc | ChainIteratorStage1::_U::_L | predicate (arb_test) |
| CheckedConsistencies | GenbankRef | PT_FamilyFinder | ChainIteratorStage1::_U::_S | predicate_description (arb_test) |
| ChecksumCollector | GenebankImporter | PT_FF_comImpl | _xfstruct | predicate_matcher (arb_test) |
| ChildLookupTable | GenePositionMap | PT_long_chain_header |
| preserve_para |
| CLI | Generation | PT_selection | prettyopts |
| ClickedElement | GenerationDuplicates | PT_short_chain_header | acceptAnyTerminal | probe |
| ClickedTarget | GetMatchesContext | PT_statistic | acceptConsensusTerminal | probe_combi_statistic |
| ClientActionTracker | GfileFormat | PT_Traversal | adfiltercbstruct | probe_input_data |
| Cluster | Globals | PTserverConnection | aisc_bytes_list | probe_statistic_struct |
| Clusterer | GlobalStringBuffers |
| aisc_com | probe_struct_global |
| ClustersData | GLwDrawingAreaCallbackStruct | aisc_hash_node | probe_tabs |
| Code | GLwDrawingAreaPart | QuadraticThreshold | aisc_static_set_mem | promotion |
| Codon_Group | Gmenu | QueriedGroups | ali_aligner_cell | pt_global |
| ColorGroupDef | GmenuItem | QueryExpr | ali_aligner_column | ptnd_chain_count_mishits |
| ColorMap | GmenuItemArg | QueryKey | ali_aligner_dellist |
|
| ColorRGBf | Group | QueryTarget | ali_aligner_dellist_elem |
| Column | GroupAIDkey |
| ali_aligner_last_cell | query_spec (QUERY) |
| ColumnQualityInfo | GroupBuilder | ali_aligner_result | queued_line |
| ColumnStat | GroupChanges | RandomNumberGenerator | ali_aligner_tripel |
|
| ColumnWidths | GroupCluster | Range | ali_family_member |
| CombinableSeq | GroupFoldedKey | RangeList | ali_pathmap_up_pointer | remote_awars |
| CombinedPosInfo | GroupInfo | RatioLimits | ali_prealigner_approx_element | remove_const (ARB_type_traits) |
| Command | GroupIterator | RB_INFO | ali_prealigner_approximation | remove_const< const T > (ARB_type_traits) |
| CommandOutput | GroupKeeledKey | RDP_comments | ali_prealigner_cell | remove_cv (ARB_type_traits) |
| CommentSkippingFileBuffer | GroupMarkedKey | ReadableDataLoc | ali_prealigner_column | remove_volatile (ARB_type_traits) |
| CompactedSequence | GroupMatchScorer | Reader | ali_prealigner_mask | remove_volatile< volatile T > (ARB_type_traits) |
| CompactedSubSequence | GroupNameQueryKey | ReadRule (FieldTransfer) | ali_pt_member | replace_op |
| CompareAlpha | GroupPenalty | ReadSeqVars | alist | result_struct |
| | | | |
