|
| CompareAlpha | GroupNameQueryKey | ReadSeqVars | ali_pt_member |
| CompareByLength | GroupPenalty | RealignAttempt | alist |
| AbsLoc | Complement | GroupRename_callenv | Realigner | apd_sequence |
| ACI_Labeler | ComplementLocation | GroupSearch | RecalcNeeded | arb_handlers |
| AdaptedAlignmentTransporter | CompountT | GroupSearchCommon | RecordingMacro | arb_params |
| AISC_Object | CompountT< R()> | GroupSizeKey | Rectangle (AW) | arb_prm_struct |
| ALI_ALIGNER | CompountT< R(P1)> | GroupUIdata | RefContainer | arb_progress |
| ALI_ALIGNER_CONTEXT | CompountT< R(P1,...)> | GroupXfer_callenv | Reference | arb_r2a_pro_2_nuc |
| ALI_ARBDB | CompountT< T & > | GroupZombiesKey | References | arb_r2a_pro_2_nucs |
| ALI_GLOBAL | CompountT< T * > |
| ReferringEntriesHandler (RefEntries) | arb_status_implementation |
| ALI_MAP | CompountT< T C::* > | RefPtr | arb_suppress_progress |
| ALI_NORM_SEQUENCE | CompountT< T[]> | HasLevelSmallerThan | Refs | asserter (arb_test) |
| ALI_PATHMAP | CompountT< T[N]> | HasntCurrentClusterPrefix | RefSelector (RefEntries) | auto_delete_array_ptr |
| ALI_PREALIGNER | CompressionRoot | Header | RegExpr | auto_delete_ptr |
| ALI_PREALIGNER_CONTEXT | ConfigDefinition | HeaderList | RegFieldSelection | auto_free_ptr |
| ALI_PROFILE | ConfigDeleter | HelixAlignmentQuality | RegMatch | aw_stg_struct |
| ALI_PROFILE_CONTEXT | ConfigMapping | HelixNrInfo | RequiresActionTracker | aw_toggle_data |
| ALI_PT | ConfigModifier | Helpfile | ResourceStack | aw_xargs |
| ALI_PT_CONTEXT | ConfigRenamer | Hit | RNA3D_Global | awar_vars |
| ALI_selection | Consensus | HitCounter | RNA3D_Graphics | awModDef |
| ALI_sellst_spec | ConsensusBuildParams | Host (ARB_type_traits) | RootAsWindowCallback | awt_assignment |
| ALI_SEQUENCE | ConsensusReference | Hs_struct | RootSynchronizer | awt_check_box |
| ALI_SUB_SOLUTION | ConsensusTree |
| RSpecSet | awt_hotkeys |
| ALI_TARRAY | ConsensusTreeBuilder | Rule (FieldTransfer) | awt_input_field |
| ALI_TLIST | ConstParamT | ID_checker | RulerScaler | awt_input_handler |
| ALI_TLIST_ELEM | ConstParamT< T * > | IfThenElseType | RuleSet (FieldTransfer) | awt_input_mask_global |
| ALI_TSTACK | ConstParamT< void > | IfThenElseType< false, T, F > |
| awt_input_mask_id_list |
| AliAdmin | ConstStrArray | IfThenElseType< true, T, F > | awt_item_type_selector |
| AliApplicable | ConsumeUDC | Importer | S_cfgLine | awt_linked_to_item |
| AliAutoFormatCommand | ConsumeUDC< T, false > | ImportFieldScanner | S_Frand | awt_mask_action |
| AliChange | ConsumeUDC< void, convert_possible > | ImportSession | S_RNS | awt_mask_awar_item |
| AliCompositeCommand | Convaln_exception | ImportTestData | S_Spreading | awt_mask_item |
| AliData | ConvertibleData | InfoWindow | SAI_graphic | awt_numeric_input_field |
| AliDataSlice | Counted | InfoWindowRegistry | SAI_selection | awt_radio_button |
| AliDeleteCommand | CurrSpecies | InputFileError | SAI_sellst_spec | awt_string_handler |
| AliEditCommand | CursorPos | InputFormat | SAI_string_builder | awt_text_viewport |
| AliEditor |
| InsertData | SaiAciApplicator | awt_variable |
| AliEntryCounter | Insertions | SaiBoolchainOperator | awt_viewport |
| AlignBuffer | Data | InsertPerfMeter | SaiBoolRule | awXKeymap |
| AlignDataAccess | DataLoc | Int | SaiCalcEnv | awXKeymap_modfree |
| Aligner | DB_scalable | Interpreter | SaiCalculator |
|
| Alignment | DBerror | IRS_data | SaiOperator |
| AlignmentReference | DBID | IsCallback | Sampler | binop_pair |
| AlignmentTransporter (FieldTransfer) | DbQuery (QUERY) | IsClassT | Scaler | bitcounter |
| AlignParams | DbScanner | IsEnumT | ScopedTransporter | bytestring |
| AliInsertCommand | DBwriter | IsFunctionT | SCP_Less |
|
| AliNameAndType | DecisionTree | IsFundaT | ScrollSynchronizer |
| AliView | DeconstructedTree | IsSpecificCallback | SearchAwarList | cached_taxonomy |
| Ambiguity (chartable) | DefinedCommands | IsSpecificHierarchyCallback | SearchedTree | case_op |
| AN_gl_struct | DelayReshade | Item | SearchFIFO | PT_statistic::chain_head_mem |
| Angle (AW) | Deletable | ItemClonedByRuleSet (FieldTransfer) | SearchParameter | charpLess |
| AngleBuffer | DendroSubtreeLimits | Itemfield_Selection | SearchRelativeParams | cilist |
| AP_combinableSeq | DepthMarker | ItemFieldShader | SearchRelativesReference | client_msg_queue |
| AP_DefaultTreeShader | Desco (validNames) | ItemShader | SearchSettings | cllist |
| AP_filter | DesignTargets |
| SearchTree | cmp_candidates |
| AP_main | DI_ENTRY | SearchTreeNode | cmp_Rectangles |
| AP_matrix | DI_GLOBAL_MATRIX | JoinedLocation | SEC_base | color_save_data |
| AP_pos_var | DI_MATRIX |
| SEC_base_iterator | column |
| AP_rates | Dict | SEC_base_part | common_filter_params |
| AP_sequence | DictData | Keeper | SEC_base_part_iterator | comparator |
| AP_sequence_simple_protein | DictTree | KeyInfo | SEC_bond_def | compare_by_criteria |
| AP_smatrix | DiffLines | KeySorter | SEC_constrainted | complex |
| AP_STACK | DisplayFormat | KL_params | SEC_db_interface | consensus_result |
| AP_subtree | DistanceCounter | KL_Settings | SEC_dbcb | containing (arb_test) |
| AP_tree | Distributor |
| SEC_displayParams | copy (arb_test) |
| AP_tree_edge | DNA_Table | SEC_drawn_positions | copy< const char * > (arb_test) |
| AP_tree_folding | DontTransportAlignment | Label | SEC_oriented | copy< copy< T > > (arb_test) |
| AP_tree_members | Dots | Lazy | SEC_region | count_mutpsite |
| AP_tree_root | Dragged | LazyAliData | SEC_root | count_nothing |
| AP_TreeShader | DragNDrop | LazyFloat | SEC_segment_iterator | count_unweighted |
| AP_userdef_matrix | DupCriteria | LazyPersistantFlag | SEC_seq_data | count_weighted |
| AP_weights | DuplicateLinkFilter | LeafRelation | SEC_strand_const_iterator | counter |
| ARB_countedTree | DupNameCriterion | TreeNode::LengthCollector | SEC_strand_iterator | counter (ArbProgress) |
| ARB_edge |
| LikelihoodRanges | SEC_structure_toggler | cursorpos |
| ARB_ERROR | LimitedTime | SelectedDatabase | custom_dealloc_ptr |
| ARB_inc_sleep | ED4_abstract_group_manager | LimitTracker | SelectionListSpec | customCriterion |
| ARB_init_perl_interface | ED4_abstract_sequence_terminal | LineAttachedMessage | SepBaseFreq (chartable) |
|
| ARB_seqtree | ED4_area_manager | LineBuf | Seq |
| ARB_seqtree_root | ED4_base | LinePart | SeqInfo | db_interrupt_data |
| ARB_TIME | ED4_base_position | LineQueue | SeqPart | debug_asserter (arb_test) |
| ARB_timeout | ED4_block | LineReader | Sequence | dereference |
| ARB_timestamp | ED4_block_operator | LineVector (AW) | SequenceAliData | dereference< T * > |
| ARB_tree_info | ED4_bracket_terminal | Link | SequenceBuffer | dereference< T *const > |
| ARB_tree_predicate | ED4_cb_list | List | SequenceHandler | di_protdist |
| ArbCachedString | ED4_consensus_sequence_terminal | ListDisplayRow | SequenceIterator | diff_params |
| ARBDB_memory_manager | ED4_container | LoadSaveSearchParam | SequencePosition | different_types |
| ArbDBWriter | ED4_coords | LocallyModify | SetOnce | difflineMode |
| ArbImporter | ED4_cursor | Location | Setup (iupac) | disallow_type |
| ArbMatchResult | ED4_CursorShape | LocationEditor | SetVariables | dot_insert_stat |
| ArbMatchResultsManager | ED4_device_manager | LongBranchMarker | ShaderPlugin | double_xfer |
| ArbParsimony | ED4_dragNdrop_info | LooseBases | ShallBeDeleted | doublecomplex |
| ArbPC_Context | ED4_Edit_String | LowDataCheck | ShowHelix_cd | drawdata |
| ArbPM_Context | ED4_extension |
| SimpleFormatReader | dt_bondssum |
| ArbProbe | ED4_foldable | SimpleLocation |
|
| ArbProbeCollection | ED4_folding_line | MackeParser | SimpleRoot |
| ArbProbeMatchWeighting | ED4_group_manager | MackeReader | SimpleTester | ed_key |
| ArbRefCount | ED4_highlighted_entry | MacroRecorder | SingleDictTree | epsilon_similar (arb_test) |
| ArbStringCache | ED4_host | MacroTalkSleep | SizeAwarable | equals |
| ArbTcpDat | ED4_line_terminal | MarkedPrefixes | SizeAwareRoot | expectation (arb_test) |
| ArbWriteFile_Context | ED4_list | MarkerDisplay | SizedBufferPtr | expectation_group (arb_test) |
| ArgParser | ED4_list_elem | MarkerIdentifier | SizedCstr | export_environment |
| AttributeParser | ED4_LocalWinContext | MarkerPosition | SizeOverOne | export_format |
| AutoMatchSettings | ED4_manager | MarkerXPos | SlaveCanvas | export_sequence_data |
| AvailableFieldScanner | ED4_MostRecentWinContext | MaskCommandDefinition | SlaveCanvas_internal |
|
| AW_area_management | ED4_move_info | MasterCanvas | SmartPtr |
| AW_at | ED4_multi_name_manager | MasterSequence | Smoother | fallbacks |
| AW_at_auto | ED4_multi_sequence_manager | MatchingOligo | Socinf | filter_params |
| AW_at_maxsize | ED4_multi_species_manager | MatchRequest | Sonde | for_data |
| AW_at_size | ED4_name_manager | MatrixDisplay | Sondentopf | format_props |
| AW_at_storage | ED4_objspec | MatrixOrder | SortByTopo | formatTable |
| AW_awar | ED4_objspec_registry | MaxBond | SortClusterIDsBy | fragment |
| AW_buttons_struct | ED4_orf_terminal | MemBlock | SortedFreq |
|
| AW_cb | ED4_plugin_host | MemBlockManager | Spec (TreeAdmin) |
| AW_CL_castableType | ED4_reference | MemDump | SpeciesConcatenateList | g_b_undo_entry |
| AW_click_cd | ED4_reference_terminals | Memory | SpeciesFlag | g_b_undo_gbd |
| AW_clicked_box | ED4_remap | MergeFieldScanner | SpeciesFlags | g_b_undo_header |
| AW_clicked_element | ED4_root | MessageAttachable | SpeciesInTwoTrees | g_b_undo_list |
| AW_clicked_line | ED4_root_group_manager | MessageSpamFilter | SpeciesMergeList | g_b_undo_mgr |
| AW_clicked_text | ED4_scroll_links | MetaInfo | SpeciesSelector | gb_buffer |
| AW_clip_scale_stack | ED4_scroll_picture | MetaTag | SpeciesSpace | gb_cache |
| AW_clipable | ED4_scrolled_rectangle | MetaTagTranslator | SpecificAliData | gb_cache_entry |
| AW_common | ED4_SearchPosition | MG_remap | SpecificGap | gb_callback |
| AW_common_Xm | ED4_SearchResults | MG_remaps | SpecSet | gb_callback_list |
| AW_DB_selection | ED4_seq_colors | Mismatches | SpecSetRegistry | gb_compress_list |
| AW_device | ED4_sequence_manager | MismatchWeights | Splits | gb_compress_tree |
| AW_device_size | ED4_sequence_terminal | MITuple | Spoolable | gb_data_base_type_union |
| AW_event | ED4_species_pointer | MO_Liste | SpoolableColor | gb_data_base_type_union2 |
| AW_font_group | ED4_terminal | MO_Mismatch | SpoolableString | gb_data_list |
| AW_font_limits | ED4_TerminalPredicate | ModRLimit | SPOOLER | gb_db_extended |
| AW_font_overlap | ED4_text_terminal | MostLikelySeq | SQ_ambiguities | gb_exitfun |
| AW_GC | ED4_update_info | MostUsedPos | SQ_GroupData | gb_extern_data |
| AW_GC_config | ED4_WinContext | MP_list_elem | SQ_GroupData_Impl | gb_extern_data2 |
| AW_gc_manager | ED4_WinContextFree | MP_Main | SQ_GroupData_RNA | gb_flag_types |
| AW_GC_set | ED4_window | MP_Window | SQ_helix | gb_flag_types2 |
| AW_GC_Xm | ED4_work_info | MultiFastaWriter | SQ_physical_layout | gb_flag_types3 |
| AW_helix | EdgeBetween | MultiFieldReader | SQ_weights | gb_header_flags |
| AW_hsv | EdgeChain | Multiroot | ST_base_vector | gb_header_list |
| AW_option_menu_struct | EdgeDistances | Multitype | ST_Container | gb_hierarchy_callback |
| AW_rgb16 | EdgeFinder | MutableBoundItemSel | ST_ML | gb_hierarchy_callback_list |
| AW_rgb_diff | EditedTerminal | MutableItemSelector | ST_rate_matrix | gb_hierarchy_location |
| AW_rgb_normalized | EG2PS_data | MutationsPerSite | Stack | gb_if_entries |
| AW_root | EmblImporter | Mutex | StackFrameData | gb_index_files |
| AW_root_cblist | EmblParser |
| StateStack | gb_Key |
| AW_root_Motif | Emblref | StaticCode (arb_test) | gb_local_data |
| AW_scalar | EmblSwissprotReader | NA_Alignment | StaticData | gb_map_header |
| AW_ScalerTransformer | EntryRemover | NA_Sequence | StorableSelectionList | gb_pending_callbacks |
| AW_screen_area | Error | NamedCommand | Store_species | gb_quick_save |
| AW_selection | ErrorOr | NameInformation | StrandPositionData | gb_scandir |
| AW_selection_list | ExecutingMacro | Namelist | StrictlyAliased_BasePtrRef | gb_server_data |
| AW_selection_list_entry | EXP_item_type_species_selector | NameServerConnection | StrictlyTypedCallback | gb_transaction_save |
| AW_selection_list_iterator | ExplicitQueryKey | NestingLevelKey | StringParser | gb_triggered_callback |
| AW_simple_device | ExplicitRange | NN_GlobalData | Struct2Dinfo | gb_user |
| AW_size_tracker | ExplicitReference | NoCaseCmp | Struct2Dplus3D | gbb_Cluster |
| AW_stylable | ExportFieldScanner | Node | Struct3Dinfo | gbb_data |
| AW_subset_selection | ExportFieldTracker | Node_ID_Labeler | Structure3D | gbb_freedata |
| AW_timer_cb_struct | ExportFormatInfo (SEQIO) | NodeInsertOrder | StrUniquifier | gbcmc_comm |
| AW_toggle_field_struct | Expression | NodeLeafDistance | Subinfo | gbcms_create |
| AW_trackPositions_device |
| NodeMarkers | SuppressOutput | gbcms_delete_list |
| AW_trackSpecies_device | NodeStack | SymmetricMatrixMapper | gbdata_offset |
| AW_var_target | FailedAt | NodeState | SymPart | gbdByKey |
| AW_widget_refresh_cb | FamilyFinder | NodeTextBuilder |
| gbl_param (GBL_IMPL) |
| AW_widget_value_pair | FamilyList | Noncopyable | gbm_data |
| AW_window | FamilyStat | NoSuchCommand | Tab | gbm_pool |
| AW_window_menu | FastAlignInsertion | Not | TaggedContentParser | gbm_table |
| AW_window_menu_modes | FastAlignReport | NoTuple | TargetGroup | gbs_hash_entry |
| AW_window_menu_modes_opengl | FastSearchOccurrence | NSONS | TargetItem | gbt_renamed |
| AW_window_message | FastSearchSequence | NT_global | Test | gc_desc |
| AW_window_Motif | Feature | NT_NODE | TextRef | gc_range |
| AW_window_simple_menu | FeatureLine | NT_TreeShader | TimedCombines | gde_database_access |
| AW_world | FieldReader | NtreeCommandLine | TimeStamp | gde_iteminfo |
| AW_xfig | FieldSelDef | Nuc_Group (iupac) | Token | gene_container_changed_cb_data |
| AW_xfig_line | FieldTracker | NullTracker | TokenList | gene_part_pos |
| AW_xfig_pos | File_selection |
| TokenListBlock | gene_struct |
| AW_xfig_text | FileContent | TokenMatcher | gl_struct |
| AW_zoomable | FileWatch | O_gbdByKey | TopologyShader | group_folding |
| AWT_auto_refresh | FileWriter | Oligo | TrackedAwarChange | group_match (arb_test) |
| AWT_canvas | FillStyle (AW) | OligoRegistry | TrackedFile | group_scaling |
| AWT_Codon_Code_Definition | FilterDefinition | OptiPerfMeter | TrackedFiles |
|
| AWT_command_data | FilteredExport | OrgInfo | Translator |
| AWT_config | FINAL_TYPE | Ostring | TransportedData (FieldTransfer) | has_base_at |
| AWT_config_definition | FINAL_TYPE (arb_test) | OutgroupMatcher | TransTables | has_been_deleted |
| AWT_config_mapping_def | Flag | Output | TraversalHitLimit | has_id |
| AWT_configuration | FlagLayout | OutputFormat | TREE_canvas | hash |
| AWT_configuration_selection | FormatReader |
| TREE_canvas_registry | hash_entry |
| AWT_distance_meter | FormattedFile | TreeAwarRegistry | hasSequence |
| AWT_graphic | Formatter | Package | TreeContainer | hasType |
| AWT_graphic_event | FormatTester | PaintData | TreeInfo | helix_pair_def |
| AWT_graphic_exports | ForwardParamT | PaintedNode | TreeLabeler | helix_stack |
| AWT_graphic_parsimony | ForwardParamT< T * > | Pair | TreeNode | hits_sort_params |
| AWT_graphic_tree | ForwardParamT< void > | PaperFormat | TreeOrderedSpecies | huffmann_list |
| AWT_graphic_tree_group_state | FoundGroup | Parameter | TreeParts |
|
| AWT_nonDB_graphic | FrameStack | Params | TreePositionLookup |
| AWT_PDP | FullDictTree | ParentCache | TreeReader | icilist |
| AWT_predefined_config | Function | ParentGroupNameQueryKey | TreeRelativePosition | import_format |
| AWT_registered_itemtype | Function< RT, P1, P2, void > | PARS_commands | TreeRoot | import_match |
| AWT_scaled_font_limits | Function< RT, P1, void, void > | ParsedProbeMatch | TripleOffset | indent |
| AWT_translator | Function< RT, void, void, void > | Parser | TSpecSet | indexed_name |
| AWT_tree_selection | FunInfo | PARSIMONY_testenv | TwoLeafs | initial_progress |
|
|
| PART | Type | initial_selfRef_progress |
| PartialSequence | TypedAliData | inlist |
| BackTraceInfo | GargChoice | Partition | TypedDatabaseCallback | is (arb_compile_assertion) |
| BadPositionsOrder | GB_DbScanner | PartitionSize | TypedSelectionList | is< true > (arb_compile_assertion) |
| Bakt_Info | GB_DICTIONARY | PartitionSpec | TypeMap | is_base_of (ARB_type_traits) |
| BaseCounter | GB_HASH | PartQueue | TypeOp | is_same (ARB_type_traits) |
| BaseCounts | GB_initial_transaction | PartRegistry | TypeOp< T & > | isAbove |
| BaseFrequencies | GB_INTern | Paup | TypeOp< T const > | isBelow |
| BaseInverter | GB_INTern2 | PD_formatter | TypeOp< void > | island |
| BasePosition | GB_INTern_strings | PerfTimer | TypeSwitch |
|
| BasicStatus | GB_INTern_strings2 | PersistantFlag | TypeT |
| BestEdge | GB_MAIN_TYPE | PersistentNameServerConnection |
| keychar_table |
| BI_ecoli_ref | GB_NUMHASH | PH_display | known_enum |
| BI_helix | GB_previousSecurityLevel | PH_display_status | UniqueNameDetector |
|
| BI_helix_entry | GB_securityLevel | PH_filter | UnitPair |
| BI_pairdef | GB_shell | PH_NEIGHBOUR_DIST | UnitPtr | less_DistinctPosRange |
| BitField | GB_shell4perl | PH_NEIGHBOURJOINING | UnitTest_simple | link_tree_data |
| BitMask | GB_test_shell_closed | PH_root | UnitTester | list_elem |
| BitRange | GB_topSecurityLevel | PH_used_windows | UseAnyTree | locinfo (arb_test) |
| BitsBelowBit | GB_transaction | Phaser | UsedColor | lt_field |
| BitsBelowBit< 31 > | GBCONTAINER | PHDATA | UserActionTracker | lt_probe |
| BitsBelowBit< 32 > | GBDATA | PlotParam | UserFrame | ltByArbName |
| Bitvector | GBENTRY | PlugIn | UserlandCheck | ltByInternalName |
| Block | GBENTRY_memory | PO_Less | UseTreeRoot | ltNonOverlap |
| BootstrapConfig | GBL_call_env | POS_TREE1 |
|
|
| BoundActionTracker | GBL_command_arguments | POS_TREE2 |
| BoundTreeAwarCallback | GBL_command_definition | PosGene | Validity | mark_nontree_cb_data |
| BoundWindowCallback | GBL_command_lookup_table | Position (AW) | ValueCounter | match_expectation (arb_test) |
| BranchLinewidthScaler | GBL_custom_command_lookup_table | PositionPair | ValueTuple | matchable (arb_test) |
| BranchMover | GBL_env | PosRange | Vardesc | matcher (arb_test) |
| BranchScaler | GBL_maybe_itemless_call_env | PrefixIterator | VarianceSampler | merge_scheme |
| BranchWindow | GBL_simple_call_env | PrefixProbabilities | VarUpdateInfo | mp_gl_struct |
| BufferedFileReader | GBL_streams | PrimerDesign | Vector (AW) | TreeNode::multifurc_limits |
| BufferedPipeReader | GBS_regex | PrintMaybe | Vector3 |
|
| BufferPtr | GBS_string_matcher | ProbeCandidates | ViaFtsTransporter |
|
| GBS_strstruct | ProbeCollDisplay |
| name_value_pair |
| GBT_config | ProbeCommonSettings | nameOrder |
| Cache (cache) | GBT_config_item | ProbeIterator | Warnings | nestable |
| CacheEntry (cache) | GBT_config_parser | ProbeMatch_impl | WeightedFilter | nestable (ArbProgress) |
| CacheHandle (cache) | GcgCommentWriter | ProbeMatchEventParam | Word | no_counter |
| Callback_FFV | GcgWriter | ProbeMatchParser | WrapMode | node |
| Callback_FVF | GEN_command_mode_param | ProbeMatchSettings | Writer | null_counter |
| Callback_FVV | GEN_create_map_param | ProbeOccurrence | WriteRule (FieldTransfer) | null_progress |
| Callback_VV | GEN_extract_mode_param | ProbeValuation |
| numhash_entry |
| CallbackData | GEN_gene | ProgramError |
|
| CallbackList | GEN_graphic | PromptData | Xfig_Eater |
| Candidate | GEN_item_type_species_selector | Prototype | XML_Comment | oligo_cmp_abs |
| CanvasRef | GEN_map_manager | PS_BitMap | XML_Node | oligo_cmp_rel |
| CentigradePos | GEN_map_window | PS_BitSet | XML_Text | oligo_comparator |
| ChainEntryBuffer | GEN_NodeTextBuilder | PS_Callback | XString | olist |
| ChainIteratorStage1 | GEN_position | PS_Candidate |
| output |
| ChainIteratorStage2 | GEN_position_mem_handler | PS_FileBuffer |
|
| CharCounter | GEN_root | PS_Node | _fstruct |
| CharPredicate | GEN_unique_param | PS_Probe | _GLwDrawingAreaClassPart | parameters |
| CharPtrArray | GEN_update_info | PT_compressed | _GLwDrawingAreaClassRec | pfold_mem_handler |
| CharRangeTable | GenbankParser | PT_dump_loc | _GLwDrawingAreaRec | pngInfo |
| CheckedConsistencies | GenbankReader | PT_FamilyFinder | ChainIteratorStage1::_U::_L | pngRawInfo |
| ChecksumCollector | GenbankRef | PT_FF_comImpl | ChainIteratorStage1::_U::_S | predicate (arb_test) |
| ChildLookupTable | GenebankImporter | PT_long_chain_header | _xfstruct | predicate_description (arb_test) |
| CLI | GenePositionMap | PT_selection |
| predicate_matcher (arb_test) |
| ClickedElement | Generation | PT_short_chain_header | preserve_para |
| ClickedTarget | GenerationDuplicates | PT_statistic | acceptAnyTerminal | prettyopts |
| ClientActionTracker | GetMatchesContext | PT_Traversal | acceptConsensusTerminal | probe |
| Cluster | GfileFormat | PTserverConnection | adfiltercbstruct | probe_combi_statistic |
| Clusterer | Globals |
| aisc_bytes_list | probe_input_data |
| ClustersData | GlobalStringBuffers | aisc_com | probe_statistic_struct |
| Code | GLwDrawingAreaCallbackStruct | QuadraticThreshold | aisc_hash_node | probe_struct_global |
| Codon_Group | GLwDrawingAreaPart | QueriedGroups | aisc_static_set_mem | probe_tabs |
| ColorGroupDef | Gmenu | QueryExpr | ali_aligner_cell | promotion |
| ColorMap | GmenuItem | QueryKey | ali_aligner_column | pt_global |
| ColorRGBf | GmenuItemArg | QueryTarget | ali_aligner_dellist | ptnd_chain_count_mishits |
| Column | Group |
| ali_aligner_dellist_elem |
|
| ColumnQualityInfo | GroupAIDkey | ali_aligner_last_cell |
| ColumnStat | GroupBuilder | RandomNumberGenerator | ali_aligner_result | query_spec (QUERY) |
| ColumnWidths | GroupChanges | Range | ali_aligner_tripel | queued_line |
| CombinableSeq | GroupCluster | RangeList | ali_family_member |
|
| CombinedPosInfo | GroupFoldedKey | RatioLimits | ali_pathmap_up_pointer |
| Command | GroupInfo | RB_INFO | ali_prealigner_approx_element | remote_awars |
| CommandOutput | GroupIterator | RDP_comments | ali_prealigner_approximation | remove_const (ARB_type_traits) |
| CommentSkippingFileBuffer | GroupKeeledKey | ReadableDataLoc | ali_prealigner_cell | remove_const< const T > (ARB_type_traits) |
| CompactedSequence | GroupMarkedKey | Reader | ali_prealigner_column | remove_cv (ARB_type_traits) |
| CompactedSubSequence | GroupMatchScorer | ReadRule (FieldTransfer) | ali_prealigner_mask | remove_volatile (ARB_type_traits) |
| | | | |
