|
| CompareByLength | GroupRename_callenv | RecalcNeeded | arb_handlers |
| Complement | GroupSearch | RecordingMacro | arb_params |
| AbsLoc | ComplementLocation | GroupSearchCommon | Rectangle (AW) | arb_prm_struct |
| ACI_Labeler | CompountT | GroupSizeKey | RefContainer | arb_progress |
| AdaptedAlignmentTransporter | CompountT< R()> | GroupUIdata | Reference | arb_r2a_pro_2_nuc |
| AISC_Object | CompountT< R(P1)> | GroupXfer_callenv | References | arb_r2a_pro_2_nucs |
| ALI_ALIGNER | CompountT< R(P1,...)> | GroupZombiesKey | ReferringEntriesHandler (RefEntries) | arb_status_implementation |
| ALI_ALIGNER_CONTEXT | CompountT< T & > |
| RefPtr | arb_suppress_progress |
| ALI_ARBDB | CompountT< T * > | Refs | asserter (arb_test) |
| ALI_GLOBAL | CompountT< T C::* > | HasLevelSmallerThan | RefSelector (RefEntries) | auto_delete_array_ptr |
| ALI_MAP | CompountT< T[]> | HasntCurrentClusterPrefix | RegExpr | auto_delete_ptr |
| ALI_NORM_SEQUENCE | CompountT< T[N]> | Header | RegFieldSelection | auto_free_ptr |
| ALI_PATHMAP | CompressionRoot | HeaderList | RegMatch | aw_stg_struct |
| ALI_PREALIGNER | ConfigDefinition | HelixAlignmentQuality | RequiresActionTracker | aw_toggle_data |
| ALI_PREALIGNER_CONTEXT | ConfigDeleter | HelixNrInfo | ResourceStack | aw_xargs |
| ALI_PROFILE | ConfigMapping | Helpfile | RNA3D_Global | awar_vars |
| ALI_PROFILE_CONTEXT | ConfigModifier | Hit | RNA3D_Graphics | awModDef |
| ALI_PT | ConfigRenamer | HitCounter | RootAsWindowCallback | awt_assignment |
| ALI_PT_CONTEXT | Consensus | Host (ARB_type_traits) | RootSynchronizer | awt_check_box |
| ALI_selection | ConsensusBuildParams | Hs_struct | RSpecSet | awt_hotkeys |
| ALI_sellst_spec | ConsensusReference |
| Rule (FieldTransfer) | awt_input_field |
| ALI_SEQUENCE | ConsensusTree | RulerScaler | awt_input_handler |
| ALI_SUB_SOLUTION | ConsensusTreeBuilder | ID_checker | RuleSet (FieldTransfer) | awt_input_mask_global |
| ALI_TARRAY | ConstParamT | IfThenElseType |
| awt_input_mask_id_list |
| ALI_TLIST | ConstParamT< T * > | IfThenElseType< false, T, F > | awt_item_type_selector |
| ALI_TLIST_ELEM | ConstParamT< void > | IfThenElseType< true, T, F > | S_cfgLine | awt_linked_to_item |
| ALI_TSTACK | ConstStrArray | Importer | S_Frand | awt_mask_action |
| AliAdmin | ConsumeUDC | ImportFieldScanner | S_RNS | awt_mask_awar_item |
| AliApplicable | ConsumeUDC< T, false > | ImportSession | S_Spreading | awt_mask_item |
| AliAutoFormatCommand | ConsumeUDC< void, convert_possible > | ImportTestData | SAI_graphic | awt_numeric_input_field |
| AliChange | Convaln_exception | InfoWindow | SAI_selection | awt_radio_button |
| AliCompositeCommand | ConvertibleData | InfoWindowRegistry | SAI_sellst_spec | awt_string_handler |
| AliData | Counted | InputFileError | SAI_string_builder | awt_text_viewport |
| AliDataSlice | CurrSpecies | InputFormat | SaiAciApplicator | awt_variable |
| AliDeleteCommand | CursorPos | InsertData | SaiBoolchainOperator | awt_viewport |
| AliEditCommand |
| Insertions | SaiBoolRule | awXKeymap |
| AliEditor | InsertPerfMeter | SaiCalcEnv | awXKeymap_modfree |
| AliEntryCounter | Data | Int | SaiCalculator |
|
| AlignBuffer | DataLoc | Interpreter | SaiOperator |
| AlignDataAccess | DB_scalable | IRS_data | Sampler | binop_pair |
| Aligner | DBerror | IsCallback | Scaler | bitcounter |
| Alignment | DBID | IsClassT | ScopedTransporter | bytestring |
| AlignmentReference | DbQuery (QUERY) | IsEnumT | SCP_Less |
|
| AlignmentTransporter (FieldTransfer) | DbScanner | IsFunctionT | ScrollSynchronizer |
| AlignParams | DBwriter | IsFundaT | SearchAwarList | cached_taxonomy |
| AliInsertCommand | DecisionTree | IsSpecificCallback | SearchedTree | case_op |
| AliNameAndType | DeconstructedTree | IsSpecificHierarchyCallback | SearchFIFO | PT_statistic::chain_head_mem |
| AliView | DefinedCommands | Item | SearchParameter | charpLess |
| Ambiguity (chartable) | DelayReshade | ItemClonedByRuleSet (FieldTransfer) | SearchRelativeParams | cilist |
| AN_gl_struct | Deletable | Itemfield_Selection | SearchRelativesReference | client_msg_queue |
| Angle (AW) | DendroSubtreeLimits | ItemFieldShader | SearchSettings | cllist |
| AngleBuffer | DepthMarker | ItemShader | SearchTree | cmp_candidates |
| AP_combinableSeq | Desco (validNames) |
| SearchTreeNode | cmp_Rectangles |
| AP_DefaultTreeShader | DesignTargets | SEC_base | color_save_data |
| AP_filter | DI_ENTRY | JoinedLocation | SEC_base_iterator | column |
| AP_main | DI_GLOBAL_MATRIX |
| SEC_base_part | common_filter_params |
| AP_matrix | DI_MATRIX | SEC_base_part_iterator | comparator |
| AP_pos_var | Dict | Keeper | SEC_bond_def | compare_by_criteria |
| AP_rates | DictData | KeyInfo | SEC_constrainted | complex |
| AP_sequence | DictTree | KeySorter | SEC_db_interface | consensus_result |
| AP_sequence_simple_protein | DiffLines | KL_params | SEC_dbcb | containing (arb_test) |
| AP_smatrix | DisplayFormat | KL_Settings | SEC_displayParams | copy (arb_test) |
| AP_STACK | DistanceCounter |
| SEC_drawn_positions | copy< const char * > (arb_test) |
| AP_subtree | Distributor | SEC_oriented | copy< copy< T > > (arb_test) |
| AP_tree | DNA_Table | Label | SEC_region | count_mutpsite |
| AP_tree_edge | DontTransportAlignment | Lazy | SEC_root | count_nothing |
| AP_tree_folding | Dots | LazyAliData | SEC_segment_iterator | count_unweighted |
| AP_tree_members | Dragged | LazyFloat | SEC_seq_data | count_weighted |
| AP_tree_root | DragNDrop | LazyPersistantFlag | SEC_strand_const_iterator | counter |
| AP_TreeShader | DupCriteria | LeafRelation | SEC_strand_iterator | counter (ArbProgress) |
| AP_userdef_matrix | DuplicateLinkFilter | TreeNode::LengthCollector | SEC_structure_toggler | cursorpos |
| AP_weights | DupNameCriterion | LikelihoodRanges | SelectedDatabase | custom_dealloc_ptr |
| ARB_countedTree |
| LimitedTime | SelectionListSpec | customCriterion |
| ARB_edge | LimitTracker | SepBaseFreq (chartable) |
|
| ARB_ERROR | ED4_abstract_group_manager | LineAttachedMessage | Seq |
| ARB_inc_sleep | ED4_abstract_sequence_terminal | LineBuf | SeqInfo | db_interrupt_data |
| ARB_init_perl_interface | ED4_area_manager | LinePart | SeqPart | debug_asserter (arb_test) |
| ARB_seqtree | ED4_base | LineQueue | Sequence | dereference |
| ARB_seqtree_root | ED4_base_position | LineReader | SequenceAliData | dereference< T * > |
| ARB_TIME | ED4_block | LineVector (AW) | SequenceBuffer | dereference< T *const > |
| ARB_timeout | ED4_block_operator | Link | SequenceHandler | di_protdist |
| ARB_timestamp | ED4_bracket_terminal | List | SequenceIterator | diff_params |
| ARB_tree_info | ED4_cb_list | ListDisplayRow | SequencePosition | different_types |
| ARB_tree_predicate | ED4_consensus_sequence_terminal | LoadSaveSearchParam | SetOnce | difflineMode |
| ArbCachedString | ED4_container | LocallyModify | Setup (iupac) | disallow_type |
| ARBDB_memory_manager | ED4_coords | Location | SetVariables | dot_insert_stat |
| ArbDBWriter | ED4_cursor | LocationEditor | ShaderPlugin | double_xfer |
| ArbImporter | ED4_CursorShape | LongBranchMarker | ShallBeDeleted | doublecomplex |
| ArbMatchResult | ED4_device_manager | LooseBases | ShowHelix_cd | drawdata |
| ArbMatchResultsManager | ED4_dragNdrop_info | LowDataCheck | SimpleFormatReader | dt_bondssum |
| ArbParsimony | ED4_Edit_String |
| SimpleLocation |
|
| ArbPC_Context | ED4_extension | SimpleRoot |
| ArbPM_Context | ED4_foldable | MackeParser | SimpleTester | ed_key |
| ArbProbe | ED4_folding_line | MackeReader | SingleDictTree | epsilon_similar (arb_test) |
| ArbProbeCollection | ED4_group_manager | MacroRecorder | SizeAwarable | equals |
| ArbProbeMatchWeighting | ED4_highlighted_entry | MacroTalkSleep | SizeAwareRoot | expectation (arb_test) |
| ArbRefCount | ED4_host | MarkedPrefixes | SizedBufferPtr | expectation_group (arb_test) |
| ArbStringCache | ED4_line_terminal | MarkerDisplay | SizedCstr | export_environment |
| ArbTcpDat | ED4_list | MarkerIdentifier | SizeOverOne | export_format |
| ArbWriteFile_Context | ED4_list_elem | MarkerPosition | SlaveCanvas | export_sequence_data |
| ArgParser | ED4_LocalWinContext | MarkerXPos | SlaveCanvas_internal |
|
| AttributeParser | ED4_manager | MaskCommandDefinition | SmartPtr |
| AutoMatchSettings | ED4_MostRecentWinContext | MasterCanvas | Smoother | fallbacks |
| AvailableFieldScanner | ED4_move_info | MasterSequence | Socinf | filter_params |
| AW_area_management | ED4_multi_name_manager | MatchingOligo | Sonde | for_data |
| AW_at | ED4_multi_sequence_manager | MatchRequest | Sondentopf | format_props |
| AW_at_auto | ED4_multi_species_manager | MatrixDisplay | SortByTopo | formatTable |
| AW_at_maxsize | ED4_name_manager | MatrixOrder | SortClusterIDsBy | fragment |
| AW_at_size | ED4_objspec | MaxBond | SortedFreq |
|
| AW_at_storage | ED4_objspec_registry | MemBlock | Spec (TreeAdmin) |
| AW_awar | ED4_orf_terminal | MemBlockManager | SpeciesConcatenateList | g_b_undo_entry |
| AW_buttons_struct | ED4_plugin_host | MemDump | SpeciesFlag | g_b_undo_gbd |
| AW_cb | ED4_reference | Memory | SpeciesFlags | g_b_undo_header |
| AW_CL_castableType | ED4_reference_terminals | MergeFieldScanner | SpeciesInTwoTrees | g_b_undo_list |
| AW_click_cd | ED4_remap | MessageAttachable | SpeciesMergeList | g_b_undo_mgr |
| AW_clicked_box | ED4_root | MessageSpamFilter | SpeciesSelector | gb_buffer |
| AW_clicked_element | ED4_root_group_manager | MetaInfo | SpeciesSpace | gb_cache |
| AW_clicked_line | ED4_scroll_links | MetaTag | SpecificAliData | gb_cache_entry |
| AW_clicked_text | ED4_scroll_picture | MetaTagTranslator | SpecificGap | gb_callback |
| AW_clip_scale_stack | ED4_scrolled_rectangle | MG_remap | SpecSet | gb_callback_list |
| AW_clipable | ED4_SearchPosition | MG_remaps | SpecSetRegistry | gb_compress_list |
| AW_common | ED4_SearchResults | Mismatches | Splits | gb_compress_tree |
| AW_common_Xm | ED4_seq_colors | MismatchWeights | Spoolable | gb_data_base_type_union |
| AW_DB_selection | ED4_sequence_manager | MITuple | SpoolableColor | gb_data_base_type_union2 |
| AW_device | ED4_sequence_terminal | MO_Liste | SpoolableString | gb_data_list |
| AW_device_size | ED4_species_pointer | MO_Mismatch | SPOOLER | gb_db_extended |
| AW_event | ED4_terminal | ModRLimit | SQ_ambiguities | gb_exitfun |
| AW_font_group | ED4_TerminalPredicate | MostLikelySeq | SQ_GroupData | gb_extern_data |
| AW_font_limits | ED4_text_terminal | MostUsedPos | SQ_GroupData_Impl | gb_extern_data2 |
| AW_font_overlap | ED4_update_info | MP_list_elem | SQ_GroupData_RNA | gb_flag_types |
| AW_GC | ED4_WinContext | MP_Main | SQ_helix | gb_flag_types2 |
| AW_GC_config | ED4_WinContextFree | MP_Window | SQ_physical_layout | gb_flag_types3 |
| AW_gc_manager | ED4_window | MultiFastaWriter | SQ_weights | gb_header_flags |
| AW_GC_set | ED4_work_info | MultiFieldReader | ST_base_vector | gb_header_list |
| AW_GC_Xm | EdgeBetween | Multiroot | ST_Container | gb_hierarchy_callback |
| AW_helix | EdgeChain | Multitype | ST_ML | gb_hierarchy_callback_list |
| AW_hsv | EdgeDistances | MutableBoundItemSel | ST_rate_matrix | gb_hierarchy_location |
| AW_option_menu_struct | EdgeFinder | MutableItemSelector | Stack | gb_if_entries |
| AW_rgb16 | EditedTerminal | MutationsPerSite | StackFrameData | gb_index_files |
| AW_rgb_diff | EG2PS_data | Mutex | StateStack | gb_Key |
| AW_rgb_normalized | EmblImporter |
| StaticCode (arb_test) | gb_local_data |
| AW_root | EmblParser | StaticData | gb_map_header |
| AW_root_cblist | Emblref | NA_Alignment | StorableSelectionList | gb_pending_callbacks |
| AW_root_Motif | EmblSwissprotReader | NA_Sequence | Store_species | gb_quick_save |
| AW_scalar | EntryRemover | NamedCommand | StrandPositionData | gb_scandir |
| AW_ScalerTransformer | Error | NameInformation | StrictlyAliased_BasePtrRef | gb_server_data |
| AW_screen_area | ErrorOr | Namelist | StrictlyTypedCallback | gb_transaction_save |
| AW_selection | ExecutingMacro | NameServerConnection | StringParser | gb_triggered_callback |
| AW_selection_list | EXP_item_type_species_selector | NestingLevelKey | Struct2Dinfo | gb_user |
| AW_selection_list_entry | ExplicitQueryKey | NN_GlobalData | Struct2Dplus3D | gbb_Cluster |
| AW_selection_list_iterator | ExplicitRange | NoCaseCmp | Struct3Dinfo | gbb_data |
| AW_simple_device | ExplicitReference | Node | Structure3D | gbb_freedata |
| AW_size_tracker | ExportFieldScanner | Node_ID_Labeler | StrUniquifier | gbcmc_comm |
| AW_stylable | ExportFieldTracker | NodeInsertOrder | Subinfo | gbcms_create |
| AW_subset_selection | ExportFormatInfo (SEQIO) | NodeLeafDistance | SuppressOutput | gbcms_delete_list |
| AW_timer_cb_struct | Expression | NodeMarkers | SymmetricMatrixMapper | gbdata_offset |
| AW_toggle_field_struct |
| NodeStack | SymPart | gbdByKey |
| AW_trackPositions_device | NodeState |
| gbl_param (GBL_IMPL) |
| AW_trackSpecies_device | FailedAt | NodeTextBuilder | gbm_data |
| AW_var_target | FamilyFinder | Noncopyable | Tab | gbm_pool |
| AW_widget_refresh_cb | FamilyList | NoSuchCommand | TaggedContentParser | gbm_table |
| AW_widget_value_pair | FamilyStat | Not | TargetGroup | gbs_hash_entry |
| AW_window | FastAlignInsertion | NoTuple | TargetItem | gbt_renamed |
| AW_window_menu | FastAlignReport | NSONS | Test | gc_desc |
| AW_window_menu_modes | FastSearchOccurrence | NT_global | TextRef | gc_range |
| AW_window_menu_modes_opengl | FastSearchSequence | NT_NODE | TimedCombines | gde_database_access |
| AW_window_message | Feature | NT_TreeShader | TimeStamp | gde_iteminfo |
| AW_window_Motif | FeatureLine | NtreeCommandLine | Token | gene_container_changed_cb_data |
| AW_window_simple_menu | FieldReader | Nuc_Group (iupac) | TokenList | gene_part_pos |
| AW_world | FieldSelDef | NullTracker | TokenListBlock | gene_struct |
| AW_xfig | FieldTracker |
| TokenMatcher | gl_struct |
| AW_xfig_line | File_selection | TopologyShader | group_folding |
| AW_xfig_pos | FileContent | O_gbdByKey | TrackedAwarChange | group_match (arb_test) |
| AW_xfig_text | FileWatch | Oligo | TrackedFile | group_scaling |
| AW_zoomable | FileWriter | OligoRegistry | TrackedFiles |
|
| AWT_auto_refresh | FillStyle (AW) | OptiPerfMeter | Translator |
| AWT_canvas | FilterDefinition | OrgInfo | TransportedData (FieldTransfer) | has_base_at |
| AWT_Codon_Code_Definition | FilteredExport | Ostring | TransTables | has_been_deleted |
| AWT_command_data | FINAL_TYPE | OutgroupMatcher | TraversalHitLimit | has_id |
| AWT_config | FINAL_TYPE (arb_test) | Output | TREE_canvas | hash |
| AWT_config_definition | Flag | OutputFormat | TREE_canvas_registry | hash_entry |
| AWT_config_mapping_def | FlagLayout |
| TreeAwarRegistry | hasSequence |
| AWT_configuration | FormatReader | TreeContainer | hasType |
| AWT_configuration_selection | FormattedFile | Package | TreeInfo | helix_pair_def |
| AWT_distance_meter | Formatter | PaintData | TreeLabeler | helix_stack |
| AWT_graphic | FormatTester | PaintedNode | TreeNode | hits_sort_params |
| AWT_graphic_event | ForwardParamT | Pair | TreeOrderedSpecies | huffmann_list |
| AWT_graphic_exports | ForwardParamT< T * > | PaperFormat | TreeParts |
|
| AWT_graphic_parsimony | ForwardParamT< void > | Parameter | TreePositionLookup |
| AWT_graphic_tree | FoundGroup | Params | TreeReader | icilist |
| AWT_graphic_tree_group_state | FrameStack | ParentCache | TreeRelativePosition | import_format |
| AWT_nonDB_graphic | FullDictTree | ParentGroupNameQueryKey | TreeRoot | import_match |
| AWT_PDP | Function | PARS_commands | TripleOffset | indent |
| AWT_predefined_config | Function< RT, P1, P2, void > | ParsedProbeMatch | TSpecSet | indexed_name |
| AWT_registered_itemtype | Function< RT, P1, void, void > | Parser | TwoLeafs | initial_progress |
| AWT_scaled_font_limits | Function< RT, void, void, void > | PARSIMONY_testenv | Type | initial_selfRef_progress |
| AWT_translator | FunInfo | PART | TypedAliData | inlist |
| AWT_tree_selection |
| PartialSequence | TypedDatabaseCallback | is (arb_compile_assertion) |
|
| Partition | TypedSelectionList | is< true > (arb_compile_assertion) |
| GargChoice | PartitionSize | TypeMap | is_base_of (ARB_type_traits) |
| BackTraceInfo | GB_DbScanner | PartitionSpec | TypeOp | is_same (ARB_type_traits) |
| BadPositionsOrder | GB_DICTIONARY | PartQueue | TypeOp< T & > | isAbove |
| Bakt_Info | GB_HASH | PartRegistry | TypeOp< T const > | isBelow |
| BaseCounter | GB_initial_transaction | Paup | TypeOp< void > | island |
| BaseCounts | GB_INTern | PD_formatter | TypeSwitch |
|
| BaseFrequencies | GB_INTern2 | PerfTimer | TypeT |
| BaseInverter | GB_INTern_strings | PersistantFlag |
| keychar_table |
| BasePosition | GB_INTern_strings2 | PersistentNameServerConnection | known_enum |
| BasicStatus | GB_MAIN_TYPE | PH_display | UniqueNameDetector |
|
| BestEdge | GB_NUMHASH | PH_display_status | UnitPair |
| BI_ecoli_ref | GB_previousSecurityLevel | PH_filter | UnitPtr | less_DistinctPosRange |
| BI_helix | GB_securityLevel | PH_NEIGHBOUR_DIST | UnitTest_simple | link_tree_data |
| BI_helix_entry | GB_shell | PH_NEIGHBOURJOINING | UnitTester | list_elem |
| BI_pairdef | GB_shell4perl | PH_root | UseAnyTree | locinfo (arb_test) |
| BitField | GB_test_shell_closed | PH_used_windows | UsedColor | lt_field |
| BitMask | GB_topSecurityLevel | Phaser | UserActionTracker | lt_probe |
| BitRange | GB_transaction | PHDATA | UserFrame | ltByArbName |
| BitsBelowBit | GBCONTAINER | PlotParam | UserlandCheck | ltByInternalName |
| BitsBelowBit< 31 > | GBDATA | PlugIn | UseTreeRoot | ltNonOverlap |
| BitsBelowBit< 32 > | GBENTRY | PO_Less |
|
|
| Bitvector | GBENTRY_memory | POS_TREE1 |
| Block | GBL_call_env | POS_TREE2 | Validity | mark_nontree_cb_data |
| BootstrapConfig | GBL_command_arguments | PosGene | ValueCounter | match_expectation (arb_test) |
| BoundActionTracker | GBL_command_definition | Position (AW) | ValueTuple | matchable (arb_test) |
| BoundTreeAwarCallback | GBL_command_lookup_table | PositionPair | Vardesc | matcher (arb_test) |
| BoundWindowCallback | GBL_custom_command_lookup_table | PosRange | VarianceSampler | merge_scheme |
| BranchLinewidthScaler | GBL_env | PrefixIterator | VarUpdateInfo | mp_gl_struct |
| BranchMover | GBL_maybe_itemless_call_env | PrefixProbabilities | Vector (AW) | TreeNode::multifurc_limits |
| BranchScaler | GBL_simple_call_env | PrimerDesign | Vector3 |
|
| BranchWindow | GBL_streams | PrintMaybe | ViaFtsTransporter |
| BufferedFileReader | GBS_regex | ProbeCandidates |
| name_value_pair |
| BufferedPipeReader | GBS_string_matcher | ProbeCollDisplay | nameOrder |
| BufferPtr | GBS_strstruct | ProbeCommonSettings | Warnings | nestable |
|
| GBT_config | ProbeIterator | WeightedFilter | nestable (ArbProgress) |
| GBT_config_item | ProbeMatch_impl | Word | no_counter |
| Cache (cache) | GBT_config_parser | ProbeMatchEventParam | WrapMode | node |
| CacheEntry (cache) | GcgCommentWriter | ProbeMatchParser | Writer | null_counter |
| CacheHandle (cache) | GcgWriter | ProbeMatchSettings | WriteRule (FieldTransfer) | null_progress |
| Callback_FFV | GEN_command_mode_param | ProbeOccurrence |
| numhash_entry |
| Callback_FVF | GEN_create_map_param | ProbeValuation |
|
| Callback_FVV | GEN_extract_mode_param | ProgramError | XCmdType |
| Callback_VV | GEN_gene | PromptData | Xfig_Eater | oligo_cmp_abs |
| CallbackData | GEN_graphic | Prototype | XML_Comment | oligo_cmp_rel |
| CallbackList | GEN_item_type_species_selector | PS_BitMap | XML_Node | oligo_comparator |
| Candidate | GEN_map_manager | PS_BitSet | XML_Text | olist |
| CanvasRef | GEN_map_window | PS_Callback | XString | output |
| CentigradePos | GEN_NodeTextBuilder | PS_Candidate |
|
|
| ChainEntryBuffer | GEN_position | PS_FileBuffer |
| ChainIteratorStage1 | GEN_position_mem_handler | PS_Node | _fstruct | parameters |
| ChainIteratorStage2 | GEN_root | PS_Probe | _GLwDrawingAreaClassPart | pfold_mem_handler |
| CharCounter | GEN_unique_param | PT_compressed | _GLwDrawingAreaClassRec | pngInfo |
| CharPredicate | GEN_update_info | PT_dump_loc | _GLwDrawingAreaRec | pngRawInfo |
| CharPtrArray | GenbankParser | PT_FamilyFinder | ChainIteratorStage1::_U::_L | predicate (arb_test) |
| CharRangeTable | GenbankReader | PT_FF_comImpl | ChainIteratorStage1::_U::_S | predicate_description (arb_test) |
| CheckedConsistencies | GenbankRef | PT_long_chain_header | _xfstruct | predicate_matcher (arb_test) |
| ChecksumCollector | GenebankImporter | PT_selection |
| preserve_para |
| ChildLookupTable | GenePositionMap | PT_short_chain_header | prettyopts |
| CLI | Generation | PT_statistic | acceptAnyTerminal | probe |
| ClickedElement | GenerationDuplicates | PT_Traversal | acceptConsensusTerminal | probe_combi_statistic |
| ClickedTarget | GetMatchesContext | PTserverConnection | adfiltercbstruct | probe_input_data |
| ClientActionTracker | GfileFormat |
| aisc_bytes_list | probe_statistic_struct |
| Cluster | Globals | aisc_com | probe_struct_global |
| Clusterer | GlobalStringBuffers | QuadraticThreshold | aisc_hash_node | probe_tabs |
| ClustersData | GLwDrawingAreaCallbackStruct | QueriedGroups | aisc_static_set_mem | promotion |
| Code | GLwDrawingAreaPart | QueryExpr | ali_aligner_cell | pt_global |
| Codon_Group | Gmenu | QueryKey | ali_aligner_column | ptnd_chain_count_mishits |
| ColorGroupDef | GmenuItem | QueryTarget | ali_aligner_dellist |
|
| ColorMap | GmenuItemArg |
| ali_aligner_dellist_elem |
| ColorRGBf | Group | ali_aligner_last_cell | query_spec (QUERY) |
| Column | GroupAIDkey | RandomNumberGenerator | ali_aligner_result | queued_line |
| ColumnQualityInfo | GroupBuilder | Range | ali_aligner_tripel |
|
| ColumnStat | GroupChanges | RangeList | ali_family_member |
| ColumnWidths | GroupCluster | RatioLimits | ali_pathmap_up_pointer | remote_awars |
| CombinableSeq | GroupFoldedKey | RB_INFO | ali_prealigner_approx_element | remove_const (ARB_type_traits) |
| CombinedPosInfo | GroupInfo | RDP_comments | ali_prealigner_approximation | remove_const< const T > (ARB_type_traits) |
| Command | GroupIterator | ReadableDataLoc | ali_prealigner_cell | remove_cv (ARB_type_traits) |
| CommandOutput | GroupKeeledKey | Reader | ali_prealigner_column | remove_volatile (ARB_type_traits) |
| CommentSkippingFileBuffer | GroupMarkedKey | ReadRule (FieldTransfer) | ali_prealigner_mask | remove_volatile< volatile T > (ARB_type_traits) |
| CompactedSequence | GroupMatchScorer | ReadSeqVars | ali_pt_member | replace_op |
| CompactedSubSequence | GroupNameQueryKey | RealignAttempt | alist | result_struct |
| CompareAlpha | GroupPenalty | Realigner | apd_sequence | revcomp_op |
| | | | |
