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| | E4B_AVOID_UNNEEDED_CASTS (multi_sequence_manager) |
| |
| | ED4_multi_sequence_manager (const char *id, AW_pos width, AW_pos height, ED4_manager *parent) |
| |
| | DECLARE_DUMP_FOR_LEAFCLASS (ED4_manager) |
| |
| | E4B_AVOID_UNNEEDED_CASTS (manager) |
| |
| | DECLARE_DUMP_FOR_BASECLASS (ED4_manager, ED4_base) |
| |
| void | add_delete_callback (const ED4_managerCallback &cb) |
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| void | remove_delete_callback (const ED4_managerCallback &cb) |
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| int | refresh_flag_ok () |
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| void | changed_by_database () OVERRIDE |
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| void | deleted_from_database () OVERRIDE |
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| void | Show (bool refresh_all, bool is_cleared) OVERRIDE |
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| bool | calc_bounding_box () FINAL_OVERRIDE |
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| ED4_returncode | distribute_children () |
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| ED4_returncode | event_sent_by_parent (AW_event *event, AW_window *aww) FINAL_OVERRIDE |
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| void | request_refresh (int clear=1) FINAL_OVERRIDE |
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| ED4_returncode | clear_refresh () |
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| void | resize_requested_children () OVERRIDE |
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| void | update_requested_children () OVERRIDE |
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| void | delete_requested_children () OVERRIDE |
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| void | Delete () FINAL_OVERRIDE |
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| ED4_returncode | move_requested_by_parent (ED4_move_info *mi) |
| |
| void | create_consensus (ED4_abstract_group_manager *upper_group_manager, arb_progress *progress) |
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| ARB_ERROR | route_down_hierarchy (const ED4_route_cb &cb) FINAL_OVERRIDE |
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| ED4_base * | find_first_that (ED4_level level, const ED4_basePredicate &fulfills_predicate) |
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| ED4_returncode | move_requested_by_child (ED4_move_info *moveinfo) |
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| void | resize_requested_by_child () |
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| ED4_returncode | refresh_requested_by_child () |
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| void | delete_requested_by_child () |
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| void | update_requested_by_child () |
| |
| ED4_base * | get_defined_level (ED4_level lev) const |
| |
| void | update_consensus (ED4_manager *old_parent, ED4_manager *new_parent, ED4_base *sequence) |
| |
| ED4_returncode | rebuild_consensi (ED4_base *start_species, ED4_update_flag update_flag) |
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| ED4_returncode | check_in_bases (ED4_base *added_base) |
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| ED4_returncode | check_out_bases (ED4_base *subbed_base) |
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| ED4_returncode | update_bases (const ED4_base *old_base, const ED4_base *new_base, PosRange range=PosRange::whole()) |
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| ED4_returncode | update_bases (const char *old_seq, int old_len, const char *new_seq, int new_len, PosRange range=PosRange::whole()) |
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| ED4_returncode | update_bases (const char *old_seq, int old_len, const ED4_base *new_base, PosRange range=PosRange::whole()) |
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| ED4_returncode | update_bases (const BaseFrequencies *old_table, const BaseFrequencies *new_table, PosRange range=PosRange::whole()) |
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| ED4_returncode | update_bases_and_rebuild_consensi (const char *old_seq, int old_len, ED4_base *species, ED4_update_flag update_flag, PosRange range=PosRange::whole()) |
| |
| ED4_returncode | handle_move (ED4_move_info *moveinfo) |
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| ED4_base * | get_competent_child (AW_pos x, AW_pos y, ED4_properties relevant_prop) |
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| ED4_base * | get_competent_clicked_child (AW_pos x, AW_pos y, ED4_properties relevant_prop) |
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| ED4_base * | search_spec_child_rek (ED4_level level) |
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| ED4_base * | search_ID (const char *id) FINAL_OVERRIDE |
| |
| void | remove_callbacks () OVERRIDE |
| |
| ED4_terminal * | get_first_terminal (int start_index=0) const |
| |
| ED4_terminal * | get_last_terminal (int start_index=-1) const |
| |
| void | hide_children () |
| |
| void | unhide_children () |
| |
| bool | is_hidden () const FINAL_OVERRIDE |
| |
| | ED4_manager (const ED4_objspec &spec_, const char *id, AW_pos width, AW_pos height, ED4_manager *parent) |
| |
| | ~ED4_manager () OVERRIDE |
| |
| void | draw_bb (int color) |
| |
| | DECLARE_DUMP_FOR_ROOTCLASS (ED4_base) |
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| GBDATA * | get_species_pointer () const |
| |
| void | set_species_pointer (GBDATA *gbd) |
| |
| bool | has_callback () const |
| |
| int | adjust_clipping_rectangle () |
| |
| void | resize_dynamic () |
| |
| ED4_returncode | clear_background (int color=0) |
| |
| void | set_links (ED4_base *width_ref, ED4_base *height_ref) |
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| void | set_both_links (ED4_base *ref) |
| |
| void | set_property (ED4_properties prop) |
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| void | clr_property (ED4_properties prop) |
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| bool | has_property (ED4_properties prop) const |
| |
| void | calc_rel_coords (AW_pos *x, AW_pos *y) |
| |
| void | calc_world_coords (AW_pos *x, AW_pos *y) const |
| |
| const AW::Position & | calc_world_coords () const |
| |
| void | update_world_coords_cache () const |
| |
| AW::Rectangle | get_win_area (ED4_window *ed4w) const |
| |
| void | request_resize () |
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| void | request_resize_of_linked () |
| |
| void | resize_requested_by_link (ED4_base *link) |
| |
| void | set_update () |
| |
| int | calc_group_depth () |
| |
| void | check_all () |
| |
| short | in_border (AW_pos abs_x, AW_pos abs_y, ED4_movemode mode) |
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| ED4_returncode | set_width () |
| |
| ED4_AREA_LEVEL | get_area_level (ED4_multi_species_manager **multi_species_manager=NULp) const |
| |
| ED4_manager * | get_parent (ED4_level lev) const |
| |
| void | unlink_from_parent () |
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| bool | has_parent (ED4_manager *Parent) |
| |
| bool | is_child_of (ED4_manager *Parent) |
| |
| virtual char * | resolve_pointer_to_string_copy (int *str_len=NULp) const |
| |
| virtual const char * | resolve_pointer_to_char_pntr (int *str_len=NULp) const |
| |
| ED4_group_manager * | is_in_folded_group () const |
| |
| char * | get_name_of_species () |
| |
| ED4_terminal * | get_next_terminal () |
| |
| ED4_terminal * | get_prev_terminal () |
| |
| void | generate_configuration_string (GBS_strstruct &buffer) |
| |
| const ED4_terminal * | get_consensus_relevant_terminal () const |
| |
| | ED4_base (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent) |
| |
| virtual | ~ED4_base () |
| |
| int | is_terminal () const |
| |
| int | is_text_terminal () const |
| |
| int | is_species_name_terminal () const |
| |
| int | is_sequence_info_terminal () const |
| |
| int | is_sequence_terminal () const |
| |
| int | is_orf_terminal () const |
| |
| int | is_pure_text_terminal () const |
| |
| int | is_columnStat_terminal () const |
| |
| int | is_bracket_terminal () const |
| |
| int | is_spacer_terminal () const |
| |
| int | is_line_terminal () const |
| |
| int | is_flag_header_terminal () const |
| |
| int | is_flag_terminal () const |
| |
| int | is_manager () const |
| |
| int | is_sequence_manager () const |
| |
| int | is_multi_name_manager () const |
| |
| int | is_name_manager () const |
| |
| int | is_multi_species_manager () const |
| |
| int | is_multi_sequence_manager () const |
| |
| int | is_device_manager () const |
| |
| int | is_group_manager () const |
| |
| int | is_root_group_manager () const |
| |
| int | is_abstract_group_manager () const |
| |
| int | is_species_manager () const |
| |
| int | is_area_manager () const |
| |
| | E4B_DECL_CASTOP (area_manager) |
| |
| | E4B_DECL_CASTOP (abstract_group_manager) |
| |
| | E4B_DECL_CASTOP (bracket_terminal) |
| |
| | E4B_DECL_CASTOP (columnStat_terminal) |
| |
| | E4B_DECL_CASTOP (consensus_sequence_terminal) |
| |
| | E4B_DECL_CASTOP (device_manager) |
| |
| | E4B_DECL_CASTOP (group_manager) |
| |
| | E4B_DECL_CASTOP (line_terminal) |
| |
| | E4B_DECL_CASTOP (manager) |
| |
| | E4B_DECL_CASTOP (multi_name_manager) |
| |
| | E4B_DECL_CASTOP (multi_sequence_manager) |
| |
| | E4B_DECL_CASTOP (multi_species_manager) |
| |
| | E4B_DECL_CASTOP (name_manager) |
| |
| | E4B_DECL_CASTOP (orf_terminal) |
| |
| | E4B_DECL_CASTOP (pure_text_terminal) |
| |
| | E4B_DECL_CASTOP (root_group_manager) |
| |
| | E4B_DECL_CASTOP (sequence_info_terminal) |
| |
| | E4B_DECL_CASTOP (sequence_manager) |
| |
| | E4B_DECL_CASTOP (sequence_terminal) |
| |
| | E4B_DECL_CASTOP (spacer_terminal) |
| |
| | E4B_DECL_CASTOP (species_manager) |
| |
| | E4B_DECL_CASTOP (species_name_terminal) |
| |
| | E4B_DECL_CASTOP (terminal) |
| |
| | E4B_DECL_CASTOP (text_terminal) |
| |
| | E4B_DECL_CASTOP (flag_header_terminal) |
| |
| | E4B_DECL_CASTOP (flag_terminal) |
| |
| ED4_species_manager * | containing_species_manager () const |
| |
| bool | is_consensus_manager () const |
| |
| bool | is_SAI_manager () const |
| |
| bool | is_species_seq_manager () const |
| |
| ED4_species_type | get_species_type () const |
| |
| bool | inside_consensus_manager () const |
| |
| bool | inside_SAI_manager () const |
| |
| bool | inside_species_seq_manager () const |
| |
| bool | is_consensus_terminal () const |
| |
| bool | is_SAI_terminal () const |
| |
| bool | is_species_seq_terminal () const |
| |
| bool | is_consensus_sequence_terminal () const |
| |
| ED4_manager * | owner () |
| |
| const ED4_manager * | owner () const |
| |
| ED4_base * | member (ED4_index i) const |
| |
| ED4_index | members () const |
| |
| bool | empty () const |
| |
| void | clear () |
| |
| void | insert_member (ED4_base *new_member) |
| |
| void | append_member (ED4_base *new_member) |
| |
| ED4_returncode | remove_member (ED4_base *member) |
| |
| ED4_index | search_member (ED4_extension *location, ED4_properties prop) |
| |
| ED4_returncode | search_target_species (ED4_extension *location, ED4_properties prop, ED4_base **found_member, ED4_level return_level) |
| |
| ED4_returncode | move_member (ED4_index old_pos, ED4_index new_pos) |
| |
| bool | members_ok () const |
| |
| | ED4_container () |
| |
| virtual | ~ED4_container () |
| |
Definition at line 1857 of file ed4_class.hxx.
Static Public Member Functions inherited from ED4_base