ARB
Public Member Functions | List of all members
AlignmentReference Class Referenceabstract
Inheritance diagram for AlignmentReference:
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Public Member Functions

 AlignmentReference (GB_CSTR alignment_, int max_seq_length_, const AlignParams &ali_params_)
 
virtual ~AlignmentReference ()
 
virtual ARB_ERROR align_to (GBDATA *gb_toalign) const =0
 
GB_CSTR get_alignment () const
 
int get_max_seq_length () const
 
const AlignParamsget_ali_params () const
 

Detailed Description

Definition at line 1731 of file fast_aligner.cxx.

Constructor & Destructor Documentation

AlignmentReference::AlignmentReference ( GB_CSTR  alignment_,
int  max_seq_length_,
const AlignParams ali_params_ 
)
inline

Definition at line 1737 of file fast_aligner.cxx.

virtual AlignmentReference::~AlignmentReference ( )
inlinevirtual

Definition at line 1744 of file fast_aligner.cxx.

Member Function Documentation

virtual ARB_ERROR AlignmentReference::align_to ( GBDATA gb_toalign) const
pure virtual
GB_CSTR AlignmentReference::get_alignment ( ) const
inline
int AlignmentReference::get_max_seq_length ( ) const
inline
const AlignParams& AlignmentReference::get_ali_params ( ) const
inline

The documentation for this class was generated from the following file: