ARB
|
Public Member Functions | |
AlignmentReference (GB_CSTR alignment_, int max_seq_length_, const AlignParams &ali_params_) | |
virtual | ~AlignmentReference () |
virtual ARB_ERROR | align_to (GBDATA *gb_toalign) const =0 |
GB_CSTR | get_alignment () const |
int | get_max_seq_length () const |
const AlignParams & | get_ali_params () const |
Definition at line 1728 of file fast_aligner.cxx.
|
inline |
Definition at line 1734 of file fast_aligner.cxx.
|
inlinevirtual |
Definition at line 1741 of file fast_aligner.cxx.
Implemented in SearchRelativesReference, ConsensusReference, and ExplicitReference.
|
inline |
Definition at line 1745 of file fast_aligner.cxx.
Referenced by ExplicitReference::align_to(), ConsensusReference::align_to(), and SearchRelativesReference::align_to().
|
inline |
Definition at line 1746 of file fast_aligner.cxx.
Referenced by ExplicitReference::align_to(), ConsensusReference::align_to(), and SearchRelativesReference::align_to().
|
inline |
Definition at line 1747 of file fast_aligner.cxx.
Referenced by ExplicitReference::align_to(), ConsensusReference::align_to(), and SearchRelativesReference::align_to().