chartable::SepBaseFreq Class Reference

#include <chartable.h>

Inheritance diagram for chartable::SepBaseFreq:

Collaboration diagram for chartable::SepBaseFreq:

Public Member Functions
	SepBaseFreq (int maxseqlength)
	~SepBaseFreq ()
void	init (int length)
int	size () const
int	get_table_entry_size () const
void	expand_table_entry_size ()
bool	bigger_table_entry_size_needed (int new_max_count)
int	operator[] (int offset) const
void	inc_short (int offset, int incr)
void	dec_short (int offset, int decr)
void	inc_long (int offset, int incr)
void	dec_long (int offset, int decr)
int	firstDifference (const SepBaseFreq &other, int start, int end, int *firstDifferentPos) const
int	lastDifference (const SepBaseFreq &other, int start, int end, int *lastDifferentPos) const
void	add (const SepBaseFreq &other, int start, int end)
void	sub (const SepBaseFreq &other, int start, int end)
void	sub_and_add (const SepBaseFreq &Sub, const SepBaseFreq &Add, PosRange range)
void	change_table_length (int new_length, int default_entry)
int	empty () const

Detailed Description

Definition at line 63 of file chartable.h.

Constructor & Destructor Documentation

SepBaseFreq::SepBaseFreq

(

int

maxseqlength

)

Definition at line 288 of file chartable.cxx.

References init(), and NULp.

SepBaseFreq::~SepBaseFreq

(

)

Definition at line 296 of file chartable.cxx.

Member Function Documentation

void SepBaseFreq::init

(

int

length

)

Definition at line 37 of file chartable.cxx.

References length, and NULp.

Referenced by BaseFrequencies::init(), and SepBaseFreq().

int chartable::SepBaseFreq::size ( ) const

inline

Definition at line 115 of file chartable.h.

Referenced by BaseFrequencies::size().

int chartable::SepBaseFreq::get_table_entry_size ( ) const

inline

Definition at line 117 of file chartable.h.

void SepBaseFreq::expand_table_entry_size

(

)

Definition at line 58 of file chartable.cxx.

References ct_assert, LONG_TABLE_ELEM_SIZE, and SHORT_TABLE_ELEM_SIZE.

bool chartable::SepBaseFreq::bigger_table_entry_size_needed ( int  new_max_count )

inline

Definition at line 119 of file chartable.h.

References SHORT_TABLE_ELEM_SIZE, and SHORT_TABLE_MAX_VALUE.

int chartable::SepBaseFreq::operator[] ( int  offset ) const

inline

Definition at line 121 of file chartable.h.

References SHORT_TABLE_ELEM_SIZE.

void chartable::SepBaseFreq::inc_short ( int  offset, int  incr  )

inline

Definition at line 123 of file chartable.h.

References ct_assert.

Referenced by BaseFrequencies::add().

void chartable::SepBaseFreq::dec_short ( int  offset, int  decr  )

inline

Definition at line 128 of file chartable.h.

References ct_assert.

Referenced by BaseFrequencies::sub().

void chartable::SepBaseFreq::inc_long ( int  offset, int  incr  )

inline

Definition at line 133 of file chartable.h.

Referenced by BaseFrequencies::add().

void chartable::SepBaseFreq::dec_long ( int  offset, int  decr  )

inline

Definition at line 137 of file chartable.h.

References ct_assert.

Referenced by BaseFrequencies::sub().

int SepBaseFreq::firstDifference	(	const SepBaseFreq &	other,
		int	start,
		int	end,
		int *	firstDifferentPos
	)		const

Definition at line 192 of file chartable.cxx.

References result, and SHORT_TABLE_ELEM_SIZE.

Referenced by BaseFrequencies::changed_range().

int SepBaseFreq::lastDifference	(	const SepBaseFreq &	other,
		int	start,
		int	end,
		int *	lastDifferentPos
	)		const

Definition at line 239 of file chartable.cxx.

References result, SHORT_TABLE_ELEM_SIZE, and start.

Referenced by BaseFrequencies::changed_range().

void SepBaseFreq::add	(	const SepBaseFreq &	other,
		int	start,
		int	end
	)

Definition at line 80 of file chartable.cxx.

References ct_assert, INVALID_TABLE_OPERATION, and SHORT_TABLE_ELEM_SIZE.

void SepBaseFreq::sub	(	const SepBaseFreq &	other,
		int	start,
		int	end
	)

Definition at line 110 of file chartable.cxx.

References ct_assert, INVALID_TABLE_OPERATION, and SHORT_TABLE_ELEM_SIZE.

void SepBaseFreq::sub_and_add	(	const SepBaseFreq &	Sub,
		const SepBaseFreq &	Add,
		PosRange	range
	)

Definition at line 140 of file chartable.cxx.

References ct_assert, PosRange::end(), INVALID_TABLE_OPERATION, SHORT_TABLE_ELEM_SIZE, start, and PosRange::start().

Referenced by BaseFrequencies::sub_and_add().

void SepBaseFreq::change_table_length	(	int	new_length,
		int	default_entry
	)

Definition at line 304 of file chartable.cxx.

References ct_assert, and SHORT_TABLE_ELEM_SIZE.

Referenced by BaseFrequencies::change_table_length().

int SepBaseFreq::empty

(

)

const

Definition at line 348 of file chartable.cxx.

References SHORT_TABLE_ELEM_SIZE.

Member Data Documentation

unsigned char* chartable::SepBaseFreq::shortTable

Definition at line 69 of file chartable.h.

int* chartable::SepBaseFreq::longTable

Definition at line 70 of file chartable.h.

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The documentation for this class was generated from the following files:

• SL/CONSENSUS/chartable.h
• SL/CONSENSUS/chartable.cxx