FormatReader Struct Reference

#include <reader.h>

Inheritance diagram for FormatReader:

Public Member Functions
virtual	~FormatReader ()
virtual bool	read_one_entry (Seq &seq) __ATTR__USERESULT=0
virtual bool	failed () const =0
virtual void	ignore_rest_of_file ()=0
virtual void	rewind ()=0
virtual InputFormat &	get_data ()=0

Static Public Member Functions
static SmartPtr< FormatReader >	create (const FormattedFile &in)

Detailed Description

Definition at line 69 of file reader.h.

Constructor & Destructor Documentation

virtual FormatReader::~FormatReader ( )

inlinevirtual

Definition at line 70 of file reader.h.

Member Function Documentation

virtual bool FormatReader::read_one_entry ( Seq &  seq )

pure virtual

Implemented in MackeReader, GenbankReader, and EmblSwissprotReader.

virtual bool FormatReader::failed ( ) const

pure virtual

Implemented in MackeReader, and SimpleFormatReader.

virtual void FormatReader::ignore_rest_of_file ( )

pure virtual

Implemented in MackeReader, and SimpleFormatReader.

virtual void FormatReader::rewind ( )

pure virtual

Implemented in MackeReader, and SimpleFormatReader.

virtual InputFormat& FormatReader::get_data ( )

pure virtual

Implemented in MackeReader, GenbankReader, and EmblSwissprotReader.

FormatReaderPtr FormatReader::create ( const FormattedFile &  in )

static

Definition at line 13 of file convert.cxx.

References EMBL, GENBANK, MACKE, FormattedFile::name(), NULp, SWISSPROT, throw_unsupported_input_format(), and FormattedFile::type().

Referenced by convert(), genbank_to_gcg(), read_alignment(), and to_macke().

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The documentation for this struct was generated from the following files:

• CONVERTALN/reader.h
• CONVERTALN/convert.cxx