ARB: Writer Class Reference

ARB

#include <reader.h>

Inheritance diagram for Writer:

Inheritance graph

Collaboration diagram for Writer:

Collaboration graph

Public Member Functions
	Writer ()

virtual	~Writer ()

virtual bool	ok () const =0

virtual void	out (char ch)=0

virtual const char *	name () const =0

virtual void	throw_write_error () const __ATTR__NORETURN

virtual int	out (const char *text)

virtual int	outf (const char *format,...) __ATTR__FORMAT_MEMBER(1)

void	repeated (char ch, int repeat)

virtual	~Writer ()

virtual void	addSequence (GBDATA *)=0

virtual void	finish ()

const char *	get_error () const

bool	ok () const

Protected Member Functions
virtual void	set_error (const char *error)

Detailed Description

Definition at line 95 of file reader.h.

Constructor & Destructor Documentation

Writer::Writer ( )

inline

Definition at line 96 of file reader.h.

virtual Writer::~Writer ( )

inlinevirtual

Definition at line 97 of file reader.h.

virtual Writer::~Writer ( )

inlinevirtual

Definition at line 62 of file arb_export_sequences.cxx.

Member Function Documentation

virtual bool Writer::ok ( ) const

pure virtual

Implemented in FileWriter, and GcgCommentWriter.

Referenced by gcg_doc_out(), main(), and FINAL_TYPE< SEQTYPE >::~ArbWriter().

virtual void Writer::out ( char ch )

pure virtual

virtual const char* Writer::name ( ) const

pure virtual

Implemented in FileWriter, and GcgCommentWriter.

Referenced by macke_seq_info_out(), and throw_write_error().

void Writer::throw_write_error ( ) const

virtual

Reimplemented in GcgCommentWriter.

Definition at line 107 of file reader.cxx.

References name(), and throw_errorf().

Referenced by FileWriter::out(), and FileWriter::outf().

virtual int Writer::out ( const char * text )

inlinevirtual

Reimplemented in FileWriter.

Definition at line 104 of file reader.h.

References out().

int Writer::outf	(	const char *	format,
			...
	)

virtual

Reimplemented in FileWriter.

Definition at line 121 of file reader.cxx.

References buffer, ca_assert, LINESIZE, out(), va_end(), and va_start().

Referenced by embl_out_comments(), embl_out_header(), embl_out_origin(), embl_print_completeness(), gcg_out_origin(), gcg_seq_out(), genbank_out_base_count(), genbank_out_header(), genbank_print_completeness(), macke_out_header(), macke_seq_data_out(), macke_seq_display_out(), Seq::out(), paup_print_header(), paup_print_header_counters(), paup_print_headerstart(), paup_print_line(), and printable_print_line().

void Writer::repeated	(	char	ch,
		int	repeat
	)

inline

Definition at line 113 of file reader.h.

References out().

Referenced by genbank_out_header().

virtual void Writer::set_error ( const char * error )

inlineprotectedvirtual

Definition at line 53 of file arb_export_sequences.cxx.

References arb_assert, and error().

Referenced by FINAL_TYPE< SEQTYPE >::addSequence(), FINAL_TYPE< SEQTYPE >::ArbWriter(), and FINAL_TYPE< SEQTYPE >::finish().

virtual void Writer::addSequence ( GBDATA * )

pure virtual

Implemented in FINAL_TYPE< SEQTYPE >, FINAL_TYPE< SEQTYPE >, and MultiFastaWriter.

Referenced by main().

virtual void Writer::finish ( )

inlinevirtual

Reimplemented in FINAL_TYPE< SEQTYPE >, and FINAL_TYPE< SEQTYPE >.

Definition at line 65 of file arb_export_sequences.cxx.

Referenced by main().

const char* Writer::get_error ( ) const

inline

Definition at line 67 of file arb_export_sequences.cxx.

References NULp.

Referenced by main(), and ok().

bool Writer::ok ( ) const

inline

Definition at line 70 of file arb_export_sequences.cxx.

References get_error().

The documentation for this class was generated from the following files:

CONVERTALN/reader.h
TOOLS/arb_export_sequences.cxx
CONVERTALN/reader.cxx