Public Member Functions | List of all members
SequenceBuffer Class Reference

#include <SequenceBuffer.h>

Inheritance diagram for SequenceBuffer:
Inheritance graph
Collaboration diagram for SequenceBuffer:
Collaboration graph

Public Member Functions

 SequenceBuffer (size_t expectedSize)
 ~SequenceBuffer ()
void addLine (const std::string &line)
const BaseCountergetBaseCounter () const
BaseCountergetBaseCounter ()
const chargetSequence () const

Detailed Description

Definition at line 70 of file SequenceBuffer.h.

Constructor & Destructor Documentation

SequenceBuffer::SequenceBuffer ( size_t  expectedSize)

Definition at line 76 of file SequenceBuffer.h.

References BaseCounter::startLineCounter().

SequenceBuffer::~SequenceBuffer ( )

Definition at line 122 of file SequenceBuffer.cxx.

References seq.

Member Function Documentation

void SequenceBuffer::addLine ( const std::string line)

Definition at line 85 of file SequenceBuffer.h.

References BaseCounter::addLine().

const BaseCounter& SequenceBuffer::getBaseCounter ( ) const

Definition at line 90 of file SequenceBuffer.h.

Referenced by Importer::check_base_counters().

BaseCounter& SequenceBuffer::getBaseCounter ( )

Definition at line 91 of file SequenceBuffer.h.

const char * SequenceBuffer::getSequence ( ) const

Definition at line 126 of file SequenceBuffer.cxx.

References BC_ALL, gi_assert, and seq.

Referenced by DBwriter::writeSequence().

The documentation for this class was generated from the following files: