PHDATA Class Reference

#include <phylo.hxx>

Inheritance diagram for PHDATA:

Collaboration diagram for PHDATA:

Public Member Functions
GBDATA *	get_gb_main ()
	PHDATA (AW_root *aw_root_, PH_root *ph_root_)
	~PHDATA ()
char *	load (char *&use)
long	get_seq_len ()

Public Attributes
char *	use
PHENTRY **	hash_elements
unsigned int	nentries
float *	markerline

Static Public Attributes
static PHDATA *	ROOT = NULp

Detailed Description

Definition at line 107 of file phylo.hxx.

Constructor & Destructor Documentation

PHDATA::PHDATA ( AW_root *  aw_root_, PH_root *  ph_root_  )

inline

Definition at line 155 of file phylo.hxx.

PHDATA::~PHDATA ( )

inline

Definition at line 166 of file phylo.hxx.

Member Function Documentation

GBDATA* PHDATA::get_gb_main ( )

inline

Definition at line 144 of file phylo.hxx.

References PH_root::get_gb_main().

Referenced by load().

char * PHDATA::load

(

char *&

use

)

Definition at line 28 of file PH_data.cxx.

References ARB_calloc(), ARB_strdup(), GB_entry(), gb_main, GB_pop_transaction(), GB_push_transaction(), GBT_first_marked_species(), GBT_get_alignment_len(), GBT_get_name_or_description(), GBT_next_marked_species(), GBT_read_string(), get_gb_main(), hash_elements, nentries, NULp, ph_assert, and use.

Referenced by startup_sequence_cb().

long PHDATA::get_seq_len ( )

inline

Definition at line 172 of file phylo.hxx.

Referenced by PH_filter::calculate_column_homology(), PH_create_ml_multiline_SAI(), PH_save_ml_cb(), PH_display::resized(), and startup_sequence_cb().

Member Data Documentation

char* PHDATA::use

Definition at line 146 of file phylo.hxx.

Referenced by load().

PHENTRY** PHDATA::hash_elements

Definition at line 148 of file phylo.hxx.

Referenced by PH_display::display(), and load().

unsigned int PHDATA::nentries

Definition at line 149 of file phylo.hxx.

Referenced by PH_display::initialize_display(), and load().

PHDATA * PHDATA::ROOT = NULp

static

Definition at line 151 of file phylo.hxx.

Referenced by PH_filter::calculate_column_homology(), PH_display::display(), PH_display::initialize_display(), ph_calc_filter_cb(), ph_check_initialized(), PH_create_ml_multiline_SAI(), PH_save_ml_cb(), PH_display::resized(), and startup_sequence_cb().

float* PHDATA::markerline

Definition at line 153 of file phylo.hxx.

Referenced by PH_display::display(), ph_calc_filter_cb(), PH_create_ml_multiline_SAI(), and PH_save_ml_cb().

---

The documentation for this class was generated from the following files:

• PHYLO/phylo.hxx
• PHYLO/PH_data.cxx
• PHYLO/PH_main.cxx