ProbeCandidates Class Reference

Public Member Functions
	ProbeCandidates (size_t probelen_)
void	generate_for_sequence (PT_pdc *pdc, const SmartCharPtr &seq, size_t bp)
void	create_tprobes (PT_pdc *pdc, int ingroup_size)

Detailed Description

Definition at line 1253 of file PT_new_design.cxx.

Constructor & Destructor Documentation

ProbeCandidates::ProbeCandidates ( size_t  probelen_ )

inline

Definition at line 1263 of file PT_new_design.cxx.

Member Function Documentation

void ProbeCandidates::generate_for_sequence ( PT_pdc *  pdc, const SmartCharPtr &  seq, size_t  bp  )

inline

Definition at line 1268 of file PT_new_design.cxx.

References arb_progress::done(), ProbeIterator::feasible(), ProbeIterator::next(), and ProbeIterator::occurrence().

Referenced by DesignTargets::generate().

void ProbeCandidates::create_tprobes ( PT_pdc *  pdc, int  ingroup_size  )

inline

Definition at line 1293 of file PT_new_design.cxx.

References aisc_link(), ARB_strndup(), max, pt_get_temperature(), and ProbeOccurrence::sequence().

Referenced by PT_start_design().

---

The documentation for this class was generated from the following file:

• PROBE/PT_new_design.cxx