DBwriter Class Reference

#include <DBwriter.h>

Inheritance diagram for DBwriter:

Collaboration diagram for DBwriter:

Public Member Functions
	DBwriter (ImportSession &session_, const char *Ali_name)
void	createOrganism (const string &flatfile, const char *importerTag)
void	writeFeature (const Feature &feature, long seqLength)
void	writeSequence (const SequenceBuffer &seqData)
void	renumberDuplicateGenes ()
void	finalizeOrganism (const MetaInfo &meta, const References &refs, Importer &importer)

Static Public Member Functions
static void	deleteStaticData ()

Detailed Description

Definition at line 53 of file DBwriter.h.

Constructor & Destructor Documentation

DBwriter::DBwriter ( ImportSession &  session_, const char *  Ali_name  )

inline

Definition at line 69 of file DBwriter.h.

Member Function Documentation

void DBwriter::createOrganism	(	const string &	flatfile,
		const char *	importerTag
	)

Definition at line 87 of file DBwriter.cxx.

References UniqueNameDetector::add_name(), AWTC_makeUniqueShortName(), DB_create_container(), DB_create_string_field(), and gi_assert.

void DBwriter::writeFeature	(	const Feature &	feature,
		long	seqLength
	)

Definition at line 149 of file DBwriter.cxx.

References ARB_HIDDEN, Location::create_GEN_position(), Feature::createGeneName(), DB_create_byte_field(), DB_create_container(), DB_create_string_field(), GEN_write_position(), Feature::getLocation(), Feature::getQualifiers(), Feature::getType(), gi_assert, and type.

Referenced by Importer::parseFeatureTable().

void DBwriter::writeSequence

(

const SequenceBuffer &

seqData

)

Definition at line 198 of file DBwriter.cxx.

References GB_STRING, GB_write_string(), GBT_add_data(), SequenceBuffer::getSequence(), and gi_assert.

void DBwriter::renumberDuplicateGenes

(

)

Definition at line 207 of file DBwriter.cxx.

References digits(), GB_entry(), GB_nextEntry(), GB_read_char_pntr(), GB_write_string(), GBS_global_string(), and gi_assert.

void DBwriter::finalizeOrganism	(	const MetaInfo &	meta,
		const References &	refs,
		Importer &	importer
	)

Definition at line 380 of file DBwriter.cxx.

References DB_create_string_field(), GB_warning(), MetaInfo::getEntries(), References::getKeys(), NULp, and References::tagged_content().

void DBwriter::deleteStaticData ( )

static

Definition at line 419 of file DBwriter.cxx.

References NULp.

Referenced by ImportSession::~ImportSession().

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The documentation for this class was generated from the following files:

• GENOM_IMPORT/DBwriter.h
• GENOM_IMPORT/DBwriter.cxx