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Realigner Class Reference

Public Member Functions

 Realigner (const char *ali_source_, const char *ali_dest_, size_t ali_len_)
 
size_t get_needed_dest_alilen () const
 
void set_failure (const char *reason)
 
void clear_failure ()
 
const charfailure () const
 
charrealign_seq (TransTables &allowed, const char *const source, size_t source_len, const char *const dest, size_t dest_len, bool cutoff_dna)
 

Detailed Description

Definition at line 830 of file TranslateRealign.cxx.

Constructor & Destructor Documentation

Realigner::Realigner ( const char ali_source_,
const char ali_dest_,
size_t  ali_len_ 
)
inline

Definition at line 889 of file TranslateRealign.cxx.

References clear_failure().

Member Function Documentation

size_t Realigner::get_needed_dest_alilen ( ) const
inline

Definition at line 898 of file TranslateRealign.cxx.

Referenced by ALI_realign_marked().

void Realigner::set_failure ( const char reason)
inline

Definition at line 900 of file TranslateRealign.cxx.

Referenced by ALI_realign_marked().

void Realigner::clear_failure ( )
inline

Definition at line 901 of file TranslateRealign.cxx.

References NULp.

Referenced by ALI_realign_marked(), and Realigner().

const char* Realigner::failure ( ) const
inline

Definition at line 903 of file TranslateRealign.cxx.

Referenced by ALI_realign_marked(), and realign_seq().

char* Realigner::realign_seq ( TransTables allowed,
const char *const  source,
size_t  source_len,
const char *const  dest,
size_t  dest_len,
bool  cutoff_dna 
)
inline

The documentation for this class was generated from the following file: