Public Member Functions | List of all members
ExplicitReference Class Reference
Inheritance diagram for ExplicitReference:
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Public Member Functions

 ExplicitReference (GB_CSTR alignment_, const FastSearchSequence *targetSequence_, GBDATA *gb_alignTo_, int max_seq_length_, const AlignParams &ali_params_)
ARB_ERROR align_to (GBDATA *gb_toalign) const OVERRIDE
- Public Member Functions inherited from AlignmentReference
 AlignmentReference (GB_CSTR alignment_, int max_seq_length_, const AlignParams &ali_params_)
virtual ~AlignmentReference ()
GB_CSTR get_alignment () const
int get_max_seq_length () const
const AlignParamsget_ali_params () const

Detailed Description

Definition at line 1759 of file fast_aligner.cxx.

Constructor & Destructor Documentation

ExplicitReference::ExplicitReference ( GB_CSTR  alignment_,
const FastSearchSequence targetSequence_,
GBDATA gb_alignTo_,
int  max_seq_length_,
const AlignParams ali_params_ 

Definition at line 1764 of file fast_aligner.cxx.

Member Function Documentation

ARB_ERROR ExplicitReference::align_to ( GBDATA gb_toalign) const

The documentation for this class was generated from the following file: