ExplicitReference Class Reference

Inheritance diagram for ExplicitReference:

Collaboration diagram for ExplicitReference:

Public Member Functions
	ExplicitReference (GB_CSTR alignment_, const FastSearchSequence *targetSequence_, GBDATA *gb_alignTo_, int max_seq_length_, const AlignParams &ali_params_)
ARB_ERROR	align_to (GBDATA *gb_toalign) const OVERRIDE
Public Member Functions inherited from AlignmentReference
	AlignmentReference (GB_CSTR alignment_, int max_seq_length_, const AlignParams &ali_params_)
virtual	~AlignmentReference ()
GB_CSTR	get_alignment () const
int	get_max_seq_length () const
const AlignParams &	get_ali_params () const

Detailed Description

Definition at line 1755 of file fast_aligner.cxx.

Constructor & Destructor Documentation

ExplicitReference::ExplicitReference ( GB_CSTR  alignment_, const FastSearchSequence *  targetSequence_, GBDATA *  gb_alignTo_, int  max_seq_length_, const AlignParams &  ali_params_  )

inline

Definition at line 1760 of file fast_aligner.cxx.

Member Function Documentation

ARB_ERROR ExplicitReference::align_to ( GBDATA *  gb_toalign ) const

inlinevirtual

Implements AlignmentReference.

Definition at line 1770 of file fast_aligner.cxx.

References alignTo(), AlignmentReference::get_ali_params(), AlignmentReference::get_alignment(), and AlignmentReference::get_max_seq_length().

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The documentation for this class was generated from the following file:

• SL/FAST_ALIGNER/fast_aligner.cxx