SQ_physical_layout Class Reference

#include <SQ_physical_layout.h>

Public Member Functions
	SQ_physical_layout ()
void	SQ_calc_physical_layout (const char *sequence, int size, GBDATA *gb_quality_ali)
int	SQ_get_number_of_bases () const
double	SQ_get_gc_proportion () const

Detailed Description

Definition at line 24 of file SQ_physical_layout.h.

Constructor & Destructor Documentation

SQ_physical_layout::SQ_physical_layout

(

)

Definition at line 43 of file SQ_physical_layout.h.

Member Function Documentation

void SQ_physical_layout::SQ_calc_physical_layout	(	const char *	sequence,
		int	size,
		GBDATA *	gb_quality_ali
	)

Definition at line 61 of file SQ_physical_layout.h.

References GB_FLOAT, GB_INT, GB_search(), GB_write_float(), GB_write_int(), and seq_assert.

Referenced by SQ_pass1(), and SQ_pass1_no_tree().

int SQ_physical_layout::SQ_get_number_of_bases ( ) const

inline

Definition at line 106 of file SQ_physical_layout.h.

Referenced by SQ_pass1(), and SQ_pass1_no_tree().

double SQ_physical_layout::SQ_get_gc_proportion ( ) const

inline

Definition at line 112 of file SQ_physical_layout.h.

Referenced by SQ_pass1(), and SQ_pass1_no_tree().

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The documentation for this class was generated from the following file:

• SEQ_QUALITY/SQ_physical_layout.h