WeightedFilter Class Reference

#include <gui_aliview.hxx>

Inheritance diagram for WeightedFilter:

Collaboration diagram for WeightedFilter:

Public Member Functions
	WeightedFilter (GBDATA *gb_main, AW_root *aw_root, const char *awar_filter_name, const char *awar_columnStat_name, AW_awar *awar_default_alignment)
	~WeightedFilter ()
GBDATA *	get_gb_main () const
AW_root *	get_aw_root () const
adfiltercbstruct *	get_adfiltercbstruct ()
ColumnStat *	get_column_stat ()
AP_filter *	create_filter () const
AP_weights *	create_weights (const AP_filter *filter, GB_ERROR &error) const
AliView *	create_aliview (const char *aliname, GB_ERROR &error) const

Detailed Description

Definition at line 30 of file gui_aliview.hxx.

Constructor & Destructor Documentation

WeightedFilter::WeightedFilter	(	GBDATA *	gb_main,
		AW_root *	aw_root,
		const char *	awar_filter_name,
		const char *	awar_columnStat_name,
		AW_awar *	awar_default_alignment
	)

Definition at line 21 of file GUI_aliview.cxx.

References awt_create_select_filter(), and NULp.

WeightedFilter::~WeightedFilter

(

)

Definition at line 29 of file GUI_aliview.cxx.

Member Function Documentation

GBDATA * WeightedFilter::get_gb_main

(

)

const

Definition at line 87 of file GUI_aliview.cxx.

References adfiltercbstruct::gb_main.

Referenced by di_calculate_compressed_matrix_cb(), di_calculate_matrix(), di_calculate_tree_cb(), di_mark_by_distance(), di_view_matrix_cb(), ClustersData::get_gb_main(), and pars_generate_aliview().

AW_root * WeightedFilter::get_aw_root

(

)

const

Definition at line 91 of file GUI_aliview.cxx.

References adfiltercbstruct::awr.

Referenced by ClustersData::get_aw_root().

adfiltercbstruct* WeightedFilter::get_adfiltercbstruct ( )

inline

Definition at line 41 of file gui_aliview.hxx.

Referenced by create_pars_init_window(), DI_create_matrix_window(), pars_start_cb(), and STAT_create_chimera_check_window().

ColumnStat* WeightedFilter::get_column_stat ( )

inline

Definition at line 42 of file gui_aliview.hxx.

Referenced by create_pars_init_window(), and DI_create_matrix_window().

AP_filter * WeightedFilter::create_filter

(

)

const

Definition at line 34 of file GUI_aliview.cxx.

References awt_get_filter().

Referenced by create_aliview().

AP_weights * WeightedFilter::create_weights	(	const AP_filter *	filter,
		GB_ERROR &	error
	)		const

Definition at line 38 of file GUI_aliview.cxx.

References ColumnStat::calculate(), ColumnStat::forget(), ga_assert, GBS_global_string(), ColumnStat::get_length(), ColumnStat::get_weights(), ColumnStat::has_rates(), NULp, ColumnStat::weight_by_inverseRates(), and weights.

Referenced by create_aliview().

AliView * WeightedFilter::create_aliview	(	const char *	aliname,
		GB_ERROR &	error
	)		const

Definition at line 66 of file GUI_aliview.cxx.

References create_filter(), create_weights(), ga_assert, GB_have_error(), adfiltercbstruct::gb_main, AP_filter::is_invalid(), NULp, and weights.

Referenced by ST_ML::calc_st_ml(), calculate_clusters(), di_calculate_matrix(), di_mark_by_distance(), and pars_generate_aliview().

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The documentation for this class was generated from the following files:

• SL/GUI_ALIVIEW/gui_aliview.hxx
• SL/GUI_ALIVIEW/GUI_aliview.cxx