SearchFIFO Class Reference

#include <PRD_SearchFIFO.hxx>

Inheritance diagram for SearchFIFO:

Collaboration diagram for SearchFIFO:

Public Member Functions
	SearchFIFO (Node *root_, PRD_Sequence_Pos min_distance_to_next_match_, bool expand_IUPAC_Codes_)
	SearchFIFO ()
	~SearchFIFO ()
void	push (unsigned char base_)
void	iterateWith (PRD_Sequence_Pos pos_, unsigned char base_)
void	flush ()
void	print ()

Detailed Description

Definition at line 28 of file PRD_SearchFIFO.hxx.

Constructor & Destructor Documentation

SearchFIFO::SearchFIFO	(	Node *	root_,
		PRD_Sequence_Pos	min_distance_to_next_match_,
		bool	expand_IUPAC_Codes_
	)

Definition at line 31 of file PRD_SearchFIFO.cxx.

SearchFIFO::SearchFIFO

(

)

Definition at line 35 of file PRD_SearchFIFO.cxx.

References NULp.

SearchFIFO::~SearchFIFO

(

)

Definition at line 43 of file PRD_SearchFIFO.cxx.

References flush().

Member Function Documentation

void SearchFIFO::push

(

unsigned char

base_

)

Definition at line 73 of file PRD_SearchFIFO.cxx.

References CHAR2BIT, Node::child, BitField::FIELD, SearchParameter::next, SearchParameter::node, NULp, and SearchParameter::previous.

Referenced by PrimerDesign::matchSequenceAgainstPrimerTrees().

void SearchFIFO::iterateWith	(	PRD_Sequence_Pos	pos_,
		unsigned char	base_
	)

Definition at line 156 of file PRD_SearchFIFO.cxx.

References CHAR2BIT, CHAR2CHILD, Node::child, Node::child_bits, Node::childByBase(), BitField::FIELD, ChildLookupTable::INDEX, Node::isLeaf(), Node::isValidPrimer(), Node::last_base_index, SearchParameter::next, SearchParameter::node, NULp, and Node::parent.

Referenced by PrimerDesign::matchSequenceAgainstPrimerTrees().

void SearchFIFO::flush

(

)

Definition at line 51 of file PRD_SearchFIFO.cxx.

References SearchParameter::next, and NULp.

Referenced by PrimerDesign::matchSequenceAgainstPrimerTrees(), and ~SearchFIFO().

void SearchFIFO::print

(

)

Definition at line 352 of file PRD_SearchFIFO.cxx.

References Node::base, SearchParameter::next, SearchParameter::node, and SearchParameter::previous.

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The documentation for this class was generated from the following files:

• PRIMER_DESIGN/PRD_SearchFIFO.hxx
• PRIMER_DESIGN/PRD_SearchFIFO.cxx