MG_remap Class Reference

Inheritance diagram for MG_remap:

Collaboration diagram for MG_remap:

Public Member Functions
	MG_remap ()
	~MG_remap ()
const char *	add_reference (const char *in_reference, const char *out_reference)
char *	remap (const char *sequence) const

Detailed Description

Definition at line 56 of file MG_adapt_ali.cxx.

Constructor & Destructor Documentation

MG_remap::MG_remap ( )

inline

Definition at line 79 of file MG_adapt_ali.cxx.

MG_remap::~MG_remap ( )

inline

Definition at line 85 of file MG_adapt_ali.cxx.

Member Function Documentation

const char * MG_remap::add_reference	(	const char *	in_reference,
		const char *	out_reference
	)

Definition at line 217 of file MG_adapt_ali.cxx.

References add_reference(), GBS_global_string(), NULp, and warning().

Referenced by add_reference(), and MG_create_remap().

char * MG_remap::remap

(

const char *

sequence

)

const

Definition at line 488 of file MG_adapt_ali.cxx.

References GBS_strstruct::cut_tail(), GBS_strstruct::get_data(), GBS_strstruct::get_position(), GAP::is_std_gap(), LEFT_BORDER, mg_assert, min, GBS_strstruct::nput(), GBS_strstruct::put(), and GBS_strstruct::release().

Referenced by adaptCopiedAlignment().

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The documentation for this class was generated from the following file:

• MERGE/MG_adapt_ali.cxx