#include <PH_filter.hxx>
Public Member Functions | |
| PH_filter () | |
| ~PH_filter () | |
| char * | init (long size) |
| float * | calculate_column_homology () |
Detailed Description
Definition at line 18 of file PH_filter.hxx.
Constructor & Destructor Documentation
| PH_filter::PH_filter | ( | ) |
Definition at line 27 of file PH_filt.cxx.
| PH_filter::~PH_filter | ( | ) |
Definition at line 42 of file PH_filt.cxx.
Member Function Documentation
Definition at line 31 of file PH_filt.cxx.
References NULp, and PH_timer().
Referenced by ph_calc_filter_cb().
| float * PH_filter::calculate_column_homology | ( | ) |
Definition at line 52 of file PH_filt.cxx.
References ARB_calloc(), AW_root::awar(), AWAR_PHYLO_FILTER_AMBIG, AWAR_PHYLO_FILTER_DOT, AWAR_PHYLO_FILTER_FILTER, AWAR_PHYLO_FILTER_LOWER, AWAR_PHYLO_FILTER_MAXHOM, AWAR_PHYLO_FILTER_MINHOM, AWAR_PHYLO_FILTER_MINUS, AWAR_PHYLO_FILTER_STARTCOL, AWAR_PHYLO_FILTER_STOPCOL, COUNT_DONT_USE_MAX, DONT_COUNT, error(), GB_read_char_pntr(), GB_read_string_count(), GBT_is_alignment_protein(), get_gb_main(), AW_window::get_root(), PHDATA::get_seq_len(), arb_progress::inc_and_check_user_abort(), long, max, NULp, ph_assert, PH_used_windows::phylo_main_window, AW_awar::read_int(), PHDATA::ROOT, SKIP_COLUMN_IF_MAX, SKIP_COLUMN_IF_OCCUR, strlwr(), ta, TREAT_AS_REGULAR, TREAT_AS_UPPERCASE, PH_used_windows::windowList, and AW_awar::write_string().
Referenced by ph_calc_filter_cb().
The documentation for this class was generated from the following files:
- PHYLO/PH_filter.hxx
- PHYLO/PH_filt.cxx
