Item Struct Reference

#include <PRD_Item.hxx>

Inheritance diagram for Item:

Collaboration diagram for Item:

Public Member Functions
	Item (PRD_Sequence_Pos pos_, PRD_Sequence_Pos offset_, int length_, int ratio_, int temperature_, Item *next_)
	Item ()
	~Item ()
void	print (const char *prefix_, const char *suffix_)
int	sprint (char *buf, const char *prefix_, const char *suffix_, int max_primer_length, int max_position_length, int max_length_length)
char *	getPrimerSequence (const char *sequence_)
Public Member Functions inherited from Noncopyable
	Noncopyable ()

Public Attributes
PRD_Sequence_Pos	end_pos
PRD_Sequence_Pos	start_pos
PRD_Sequence_Pos	offset
int	length
int	GC_ratio
int	temperature
Item *	next

Detailed Description

Definition at line 9 of file PRD_Item.hxx.

Constructor & Destructor Documentation

Item::Item	(	PRD_Sequence_Pos	pos_,
		PRD_Sequence_Pos	offset_,
		int	length_,
		int	ratio_,
		int	temperature_,
		Item *	next_
	)

Definition at line 14 of file PRD_Item.cxx.

References length, and offset.

Item::Item

(

)

Definition at line 23 of file PRD_Item.cxx.

References length, NULp, and offset.

Item::~Item ( )

inline

Definition at line 22 of file PRD_Item.hxx.

Member Function Documentation

void Item::print	(	const char *	prefix_,
		const char *	suffix_
	)

Definition at line 37 of file PRD_Item.cxx.

References length, and offset.

int Item::sprint	(	char *	buf,
		const char *	prefix_,
		const char *	suffix_,
		int	max_primer_length,
		int	max_position_length,
		int	max_length_length
	)

Definition at line 45 of file PRD_Item.cxx.

References length.

char * Item::getPrimerSequence

(

const char *

sequence_

)

Definition at line 65 of file PRD_Item.cxx.

References ARB_alloc(), SequenceIterator::BACKWARD, SequenceIterator::IGNORE, length, SequenceIterator::nextBase(), SequenceIterator::pos, and PRD_strdup().

Member Data Documentation

PRD_Sequence_Pos Item::end_pos

Definition at line 10 of file PRD_Item.hxx.

PRD_Sequence_Pos Item::start_pos

Definition at line 11 of file PRD_Item.hxx.

PRD_Sequence_Pos Item::offset

Definition at line 12 of file PRD_Item.hxx.

Referenced by PrimerDesign::convertTreesToLists().

int Item::length

Definition at line 13 of file PRD_Item.hxx.

int Item::GC_ratio

Definition at line 15 of file PRD_Item.hxx.

int Item::temperature

Definition at line 16 of file PRD_Item.hxx.

Item* Item::next

Definition at line 18 of file PRD_Item.hxx.

Referenced by PrimerDesign::convertTreesToLists(), and PrimerDesign::evaluatePrimerPairs().

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The documentation for this struct was generated from the following files:

• PRIMER_DESIGN/PRD_Item.hxx
• PRIMER_DESIGN/PRD_Item.cxx