#include <ed4_class.hxx>

Inheritance diagram for ED4_base:

Collaboration diagram for ED4_base:

Public Member Functions
void	draw_bb (int color)

	DECLARE_DUMP_FOR_ROOTCLASS (ED4_base)

GBDATA *	get_species_pointer () const

void	set_species_pointer (GBDATA *gbd)

bool	has_callback () const

virtual void	changed_by_database ()

virtual void	deleted_from_database ()

int	adjust_clipping_rectangle ()

virtual void	Show (bool refresh_all, bool is_cleared)=0

virtual bool	calc_bounding_box ()=0

void	resize_dynamic ()

ED4_returncode	clear_background (int color=0)

void	set_links (ED4_base width_ref, ED4_base height_ref)

void	set_both_links (ED4_base *ref)

void	set_property (ED4_properties prop)

void	clr_property (ED4_properties prop)

bool	has_property (ED4_properties prop) const

void	calc_rel_coords (AW_pos x, AW_pos y)

void	calc_world_coords (AW_pos x, AW_pos y) const

const AW::Position &	calc_world_coords () const

void	update_world_coords_cache () const

AW::Rectangle	get_win_area (ED4_window *ed4w) const

virtual void	request_refresh (int clear=1)=0

void	request_resize ()

void	request_resize_of_linked ()

void	resize_requested_by_link (ED4_base *link)

virtual void	resize_requested_children ()=0

virtual void	delete_requested_children ()=0

virtual void	Delete ()=0

void	set_update ()

virtual void	update_requested_children ()=0

virtual ED4_returncode	event_sent_by_parent (AW_event event, AW_window aww)=0

virtual ARB_ERROR	route_down_hierarchy (const ED4_route_cb &cb)

int	calc_group_depth ()

virtual ED4_base *	search_ID (const char *id)=0

void	check_all ()

short	in_border (AW_pos abs_x, AW_pos abs_y, ED4_movemode mode)

ED4_returncode	set_width ()

ED4_AREA_LEVEL	get_area_level (ED4_multi_species_manager **multi_species_manager=NULp) const

ED4_manager *	get_parent (ED4_level lev) const

void	unlink_from_parent ()

bool	has_parent (ED4_manager *Parent)

bool	is_child_of (ED4_manager *Parent)

virtual char *	resolve_pointer_to_string_copy (int *str_len=NULp) const

virtual const char *	resolve_pointer_to_char_pntr (int *str_len=NULp) const

ED4_group_manager *	is_in_folded_group () const

virtual bool	is_hidden () const =0

char *	get_name_of_species ()

ED4_terminal *	get_next_terminal ()

ED4_terminal *	get_prev_terminal ()

void	generate_configuration_string (GBS_strstruct &buffer)

virtual void	remove_callbacks ()=0

const ED4_terminal *	get_consensus_relevant_terminal () const

	ED4_base (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent)

virtual	~ED4_base ()

int	is_terminal () const

int	is_text_terminal () const

int	is_species_name_terminal () const

int	is_sequence_info_terminal () const

int	is_sequence_terminal () const

int	is_orf_terminal () const

int	is_pure_text_terminal () const

int	is_columnStat_terminal () const

int	is_bracket_terminal () const

int	is_spacer_terminal () const

int	is_line_terminal () const

int	is_flag_header_terminal () const

int	is_flag_terminal () const

int	is_manager () const

int	is_sequence_manager () const

int	is_multi_name_manager () const

int	is_name_manager () const

int	is_multi_species_manager () const

int	is_multi_sequence_manager () const

int	is_device_manager () const

int	is_group_manager () const

int	is_root_group_manager () const

int	is_abstract_group_manager () const

int	is_species_manager () const

int	is_area_manager () const

	E4B_DECL_CASTOP (area_manager)

	E4B_DECL_CASTOP (abstract_group_manager)

	E4B_DECL_CASTOP (bracket_terminal)

	E4B_DECL_CASTOP (columnStat_terminal)

	E4B_DECL_CASTOP (consensus_sequence_terminal)

	E4B_DECL_CASTOP (device_manager)

	E4B_DECL_CASTOP (group_manager)

	E4B_DECL_CASTOP (line_terminal)

	E4B_DECL_CASTOP (manager)

	E4B_DECL_CASTOP (multi_name_manager)

	E4B_DECL_CASTOP (multi_sequence_manager)

	E4B_DECL_CASTOP (multi_species_manager)

	E4B_DECL_CASTOP (name_manager)

	E4B_DECL_CASTOP (orf_terminal)

	E4B_DECL_CASTOP (pure_text_terminal)

	E4B_DECL_CASTOP (root_group_manager)

	E4B_DECL_CASTOP (sequence_info_terminal)

	E4B_DECL_CASTOP (sequence_manager)

	E4B_DECL_CASTOP (sequence_terminal)

	E4B_DECL_CASTOP (spacer_terminal)

	E4B_DECL_CASTOP (species_manager)

	E4B_DECL_CASTOP (species_name_terminal)

	E4B_DECL_CASTOP (terminal)

	E4B_DECL_CASTOP (text_terminal)

	E4B_DECL_CASTOP (flag_header_terminal)

	E4B_DECL_CASTOP (flag_terminal)

ED4_species_manager *	containing_species_manager () const

bool	is_consensus_manager () const

bool	is_SAI_manager () const

bool	is_species_seq_manager () const

ED4_species_type	get_species_type () const

bool	inside_consensus_manager () const

bool	inside_SAI_manager () const

bool	inside_species_seq_manager () const

bool	is_consensus_terminal () const

bool	is_SAI_terminal () const

bool	is_species_seq_terminal () const

bool	is_consensus_sequence_terminal () const

Static Public Member Functions
static void	touch_world_cache ()

Public Attributes
const ED4_objspec &	spec

ED4_manager *	parent

ED4_properties	dynamic_prop

char *	id

ED4_index	index

ED4_base *	width_link

ED4_base *	height_link

ED4_extension	extension

ED4_update_info	update_info

struct {
unsigned int hidden: 1

}	flag

Detailed Description

Definition at line 893 of file ed4_class.hxx.

Constructor & Destructor Documentation

ED4_base::ED4_base	(	const ED4_objspec &	spec_,
		GB_CSTR	id,
		AW_pos	width,
		AW_pos	height,
		ED4_manager *	parent
	)

Definition at line 993 of file ED4_base.cxx.

References dynamic_prop, e4_assert, extension, HEIGHT, height_link, index, NULp, parent, ED4_extension::position, PROP_DYNA_RESIZE, PROP_NONE, ED4_extension::size, spec, ED4_objspec::static_prop, touch_world_cache(), update_info, WIDTH, width_link, X_POS, ED4_extension::y_folded, and Y_POS.

ED4_base::~ED4_base ( )

virtual

Member Function Documentation

void ED4_base::draw_bb ( int color )

Definition at line 980 of file ED4_base.cxx.

References adjust_clipping_rectangle(), AW_device::box(), calc_world_coords(), current_device(), current_ed4w(), AW::FillStyle::EMPTY, extension, HEIGHT, AW_device::pop_clip_scale(), AW_device::push_clip_scale(), ED4_extension::size, WIDTH, and ED4_foldable::world_to_win_coords().

ED4_base::DECLARE_DUMP_FOR_ROOTCLASS ( ED4_base )

GBDATA* ED4_base::get_species_pointer ( ) const

inline

Definition at line 948 of file ed4_class.hxx.

References ED4_species_pointer::Get().

Referenced by call_edit(), ED4_terminal::changed_by_database(), FINAL_TYPE< SEQTYPE >::data(), ED4_Edit_String::edit(), executeKeystroke(), FINAL_TYPE< SEQTYPE >::get_species(), has_callback(), perform_block_operation_on_part_of_sequence(), perform_block_operation_on_whole_sequence(), ED4_terminal::remove_callbacks(), ED4_terminal::resolve_pointer_to_char_pntr(), sequence_changed_cb(), and ED4_terminal::write_sequence().

void ED4_base::set_species_pointer ( GBDATA * gbd )

inline

Definition at line 949 of file ed4_class.hxx.

References ED4_species_pointer::Set().

Referenced by ED4_terminal::remove_callbacks(), EDB_root_bact::search_sequence_data_rek(), and ~ED4_base().

bool ED4_base::has_callback ( ) const

inline

Definition at line 950 of file ed4_class.hxx.

References get_species_pointer().

void ED4_base::changed_by_database ( )

virtual

Reimplemented in ED4_terminal, and ED4_manager.

Definition at line 28 of file ED4_base.cxx.

References e4_assert.

Referenced by sequence_changed_cb().

void ED4_base::deleted_from_database ( )

virtual

Reimplemented in ED4_sequence_terminal, ED4_text_terminal, ED4_terminal, and ED4_manager.

Definition at line 89 of file ED4_base.cxx.

References ED4_species_pointer::notify_deleted().

Referenced by ED4_terminal::deleted_from_database(), and sequence_changed_cb().

int ED4_base::adjust_clipping_rectangle ( )

Definition at line 907 of file ED4_base.cxx.

References AW::Rectangle::bottom(), current_device(), current_ed4w(), get_win_area(), AW::Rectangle::left(), AW_clipable::reduceClipBorders(), AW::Rectangle::right(), and AW::Rectangle::top().

Referenced by clear_background(), draw_bb(), ED4_manager::Show(), and ED4_terminal::Show().

virtual void ED4_base::Show	(	bool	refresh_all,
		bool	is_cleared
	)

pure virtual

Implemented in FINAL_TYPE< SEQTYPE >, ED4_root_group_manager, FINAL_TYPE< SEQTYPE >, ED4_terminal, and ED4_manager.

Referenced by ED4_manager::Show().

virtual bool ED4_base::calc_bounding_box ( )

pure virtual

Implemented in ED4_terminal, and ED4_manager.

Referenced by resize_requested_by_link().

void ED4_base::resize_dynamic ( )

inline

Definition at line 962 of file ed4_class.hxx.

References e4_assert, has_property(), PROP_DYNA_RESIZE, and request_resize().

Referenced by update_extension_size().

ED4_returncode ED4_base::clear_background ( int color = 0 )

Definition at line 939 of file ED4_base.cxx.

References adjust_clipping_rectangle(), AW_ALL_DEVICES, AW_device::box(), calc_world_coords(), AW_device::clear_part(), current_device(), current_ed4w(), ED4_G_FIRST_COLOR_GROUP, ED4_G_LAST_COLOR_GROUP, ED4_R_OK, extension, HEIGHT, AW_device::pop_clip_scale(), AW_device::push_clip_scale(), ED4_extension::size, AW::FillStyle::SOLID, WIDTH, ED4_foldable::world_to_win_coords(), and y.

Referenced by ED4_manager::Show(), and ED4_terminal::Show().

void ED4_base::set_links	(	ED4_base *	width_ref,
		ED4_base *	height_ref
	)

Definition at line 913 of file ED4_base.cxx.

References ED4_list< T >::append_elem(), height_link, ED4_list< T >::remove_elem(), and width_link.

Referenced by ED4_build_group_manager_start(), and set_both_links().

void ED4_base::set_both_links ( ED4_base * ref )

inline

Definition at line 972 of file ed4_class.hxx.

References set_links().

Referenced by ED4_build_group_manager_start(), PV_AddNewAAseqTerminals(), and EDB_root_bact::search_sequence_data_rek().

void ED4_base::set_property ( ED4_properties prop )

inline

Definition at line 975 of file ed4_class.hxx.

Referenced by ED4_build_group_manager_start(), EDB_root_bact::fill_data(), ED4_group_manager::fold(), PV_AddNewAAseqTerminals(), EDB_root_bact::search_sequence_data_rek(), and toggle_detailed_column_stat().

void ED4_base::clr_property ( ED4_properties prop )

inline

Definition at line 976 of file ed4_class.hxx.

Referenced by ED4_sequence_terminal::deleted_from_database(), ED4_terminal::remove_callbacks(), and ED4_group_manager::unfold().

bool ED4_base::has_property ( ED4_properties prop ) const

inline

Definition at line 977 of file ed4_class.hxx.

Referenced by ED4_terminal::changed_by_database(), ED4_multi_species_manager::count_visible_children(), ED4_sequence_terminal::deleted_from_database(), ED4_bracket_terminal::draw(), ED4_terminal::event_sent_by_parent(), generate_configuration_string(), get_consensus_relevant_terminal(), get_upper_lower_cursor_pos(), ED4_manager::handle_move(), is_in_folded_group(), ED4_manager::move_requested_by_child(), resize_dynamic(), toggle_cursor_group_folding(), ED4_group_manager::toggle_folding(), update_group_folding(), and ED4_terminal::write_sequence().

void ED4_base::calc_rel_coords	(	AW_pos *	x,
		AW_pos *	y
	)

Definition at line 810 of file ED4_base.cxx.

References calc_world_coords().

Referenced by ED4_manager::event_sent_by_parent(), and ED4_manager::handle_move().

void ED4_base::calc_world_coords	(	AW_pos *	x,
		AW_pos *	y
	)		const

inline

const AW::Position& ED4_base::calc_world_coords ( ) const

inline

Definition at line 988 of file ed4_class.hxx.

References update_world_coords_cache().

Referenced by ED4_abstract_sequence_terminal::calc_interval_displayed_in_rectangle(), calc_rel_coords(), ED4_abstract_sequence_terminal::calc_update_interval(), check_all(), clear_background(), ED4_text_terminal::draw(), ED4_line_terminal::draw(), draw_bb(), get_win_area(), in_border(), and ED4_terminal::scroll_into_view().

void ED4_base::update_world_coords_cache ( ) const

inline

Definition at line 993 of file ed4_class.hxx.

References calc_world_coords(), ED4_extension::get_parent_offset(), AW::Position::move(), and AW::Origin.

Referenced by calc_world_coords().

static void ED4_base::touch_world_cache ( )

inlinestatic

Definition at line 1008 of file ed4_class.hxx.

Referenced by ED4_manager::calc_bounding_box(), createGroupFromSelected(), ED4_manager::distribute_children(), ED4_base(), ED4_group_manager::fold(), ED4_manager::get_competent_child(), ED4_manager::get_competent_clicked_child(), ED4_manager::handle_move(), and set_width().

AW::Rectangle ED4_base::get_win_area ( ED4_window * ed4w ) const

inline

Definition at line 1012 of file ed4_class.hxx.

References calc_world_coords(), ED4_extension::get_size(), and ED4_foldable::world_to_win_coords().

Referenced by adjust_clipping_rectangle(), and ED4_bracket_terminal::draw().

virtual void ED4_base::request_refresh ( int clear = 1 )

pure virtual

Implemented in ED4_terminal, and ED4_manager.

Referenced by rebuild_consensus(), ED4_manager::request_refresh(), request_terminal_refresh(), and ED4_multi_species_manager::update_requested_children().

void ED4_base::request_resize ( )

inline

Definition at line 2187 of file ed4_class.hxx.

References ED4_manager::resize_requested_by_child(), ED4_update_info::set_resize(), and update_info.

Referenced by ED4_container::append_member(), ED4_manager::deleted_from_database(), ED4_manager::hide_children(), ED4_container::insert_member(), PV_AddNewAAseqTerminals(), ED4_container::remove_member(), resize_dynamic(), ED4_manager::resize_requested_by_child(), resize_requested_by_link(), ED4_manager::resize_requested_children(), ED4_terminal::resize_requested_children(), set_width(), and ED4_manager::unhide_children().

void ED4_base::request_resize_of_linked ( )

Definition at line 704 of file ED4_manager.cxx.

References ED4_list_elem< T >::elem(), ED4_list< T >::head(), and ED4_list_elem< T >::next().

Referenced by ED4_manager::calc_bounding_box(), and ED4_terminal::calc_bounding_box().

void ED4_base::resize_requested_by_link ( ED4_base * link )

inline

Definition at line 699 of file ED4_manager.cxx.

References calc_bounding_box(), e4_assert, height_link, link, request_resize(), and width_link.

virtual void ED4_base::resize_requested_children ( )

pure virtual

Implemented in ED4_root_group_manager, FINAL_TYPE< SEQTYPE >, ED4_terminal, and ED4_manager.

Referenced by ED4_manager::resize_requested_children().

virtual void ED4_base::delete_requested_children ( )

pure virtual

Implemented in ED4_multi_species_manager, ED4_terminal, and ED4_manager.

Referenced by ED4_manager::delete_requested_children().

virtual void ED4_base::Delete ( )

pure virtual

Implemented in ED4_terminal, and ED4_manager.

Referenced by ED4_manager::Delete().

void ED4_base::set_update ( )

inline

Definition at line 2180 of file ed4_class.hxx.

References update_info, ED4_update_info::update_requested, and ED4_manager::update_requested_by_child().

virtual void ED4_base::update_requested_children ( )

pure virtual

Implemented in ED4_multi_species_manager, ED4_terminal, and ED4_manager.

Referenced by ED4_manager::update_requested_children().

virtual ED4_returncode ED4_base::event_sent_by_parent	(	AW_event *	event,
		AW_window *	aww
	)

pure virtual

Implemented in ED4_terminal, and ED4_manager.

Referenced by ED4_manager::event_sent_by_parent().

ARB_ERROR ED4_base::route_down_hierarchy ( const ED4_route_cb & cb )

virtual

Reimplemented in ED4_manager.

Definition at line 387 of file ED4_base.cxx.

References cb.

Referenced by request_sequence_refresh(), and ED4_manager::route_down_hierarchy().

int ED4_base::calc_group_depth ( )

Definition at line 424 of file ED4_base.cxx.

References is_area_manager(), is_group_manager(), and parent.

Referenced by ED4_get_marked_from_menu(), insert_new_species_terminal(), and update_group_folding().

virtual ED4_base* ED4_base::search_ID ( const char * id )

pure virtual

Implemented in ED4_terminal, and ED4_manager.

Referenced by ED4_manager::search_ID().

void ED4_base::check_all ( )

Definition at line 894 of file ED4_base.cxx.

References calc_world_coords(), extension, is_manager(), ED4_extension::position, ED4_extension::size, and y.

short ED4_base::in_border	(	AW_pos	abs_x,
		AW_pos	abs_y,
		ED4_movemode	mode
	)

Definition at line 789 of file ED4_base.cxx.

References calc_world_coords(), ED4_M_FREE, ED4_M_HORIZONTAL, ED4_M_NO_MOVE, ED4_M_VERTICAL, extension, HEIGHT, ED4_extension::size, and WIDTH.

Referenced by ED4_manager::move_requested_by_child(), and ED4_manager::move_requested_by_parent().

ED4_returncode ED4_base::set_width ( )

ED4_AREA_LEVEL ED4_base::get_area_level ( ED4_multi_species_manager ** multi_species_manager = NULp ) const

Definition at line 497 of file ED4_base.cxx.

References ED4_A_ERROR, ED4_A_MIDDLE_AREA, ED4_A_TOP_AREA, ED4_ROOT, ED4_area_manager::get_multi_species_manager(), get_parent(), LEV_AREA, ED4_root::middle_area_man, result, and ED4_root::top_area_man.

Referenced by get_upper_lower_cursor_pos(), ED4_cursor::is_completely_visible(), ED4_cursor::is_partly_visible(), ED4_cursor::move_cursor(), and ED4_terminal::scroll_into_view().

ED4_manager * ED4_base::get_parent ( ED4_level lev ) const

inline

Definition at line 1821 of file ed4_class.hxx.

References ED4_objspec::level, parent, and spec.

Referenced by add_area_for_gde(), ED4_root::add_to_highlighted(), ED4_terminal::changed_by_database(), ED4_reference::clear(), containing_species_manager(), ED4_sequence_terminal::corresponding_columnStat_terminal(), FINAL_TYPE< SEQTYPE >::corresponding_sequence_terminal(), ED4_abstract_sequence_terminal::corresponding_species_name_terminal(), FINAL_TYPE< SEQTYPE >::corresponding_species_name_terminal(), create_new_species(), createGroupFromSelected(), ED4_reference::data_changed_cb(), ED4_reference::define(), ED4_sequence_terminal::deleted_from_database(), dot_missing_bases(), ED4_bracket_terminal::draw(), ED4_text_terminal::draw(), ED4_get_marked_from_menu(), ED4_mark_matching_species(), ED4_menu_highlight(), ED4_terminal::event_sent_by_parent(), executeKeystroke(), EDB_root_bact::fill_data(), get_area_level(), get_group_consensus(), get_name_of_species(), FINAL_TYPE< SEQTYPE >::get_species(), ED4_manager::handle_move(), insert_new_species_terminal(), ED4_multi_species_manager::invalidate_species_counters(), ED4_cursor::is_hidden_inside_group(), is_in_folded_group(), ED4_terminal::kill_object(), ED4_manager::move_requested_by_child(), multi_species_man_consensus_id_starts_with(), PV_AddCorrespondingOrfTerminals(), PV_AddOrfTerminalsToLoadedSpecies(), PV_CreateAllTerminals(), PV_HideTerminal(), PV_UnHideTerminal(), ED4_root::remove_from_highlighted(), ED4_container::search_target_species(), select_named_sequence_terminal(), ED4_terminal::setCursorTo(), toggle_cursor_group_folding(), toggle_detailed_column_stat(), ED4_multi_species_manager::update_requested_children(), and ED4_terminal::write_sequence().

void ED4_base::unlink_from_parent ( )

Definition at line 675 of file ED4_base.cxx.

References e4_assert, parent, and ED4_container::remove_member().

Referenced by ED4_manager::delete_requested_children(), and ED4_terminal::delete_requested_children().

bool ED4_base::has_parent ( ED4_manager * Parent )

Definition at line 483 of file ED4_base.cxx.

References has_parent(), is_manager(), and parent.

Referenced by has_parent(), and is_child_of().

bool ED4_base::is_child_of ( ED4_manager * Parent )

inline

Definition at line 1050 of file ed4_class.hxx.

References has_parent().

Referenced by ED4_manager::handle_move().

char * ED4_base::resolve_pointer_to_string_copy ( int * str_len = NULp ) const

virtual

Reimplemented in ED4_terminal.

Definition at line 230 of file ED4_base.cxx.

References NULp.

Referenced by add_area_for_gde(), add_species_to_merge_list(), and ED4_sequence_terminal::get_sequence_copy().

const char * ED4_base::resolve_pointer_to_char_pntr ( int * str_len = NULp ) const

virtual

Reimplemented in ED4_terminal.

Definition at line 231 of file ED4_base.cxx.

References NULp.

Referenced by generate_configuration_string(), ED4_abstract_sequence_terminal::get_length(), and FINAL_TYPE< SEQTYPE >::get_length().

ED4_group_manager * ED4_base::is_in_folded_group ( ) const

Definition at line 20 of file ED4_base.cxx.

References get_parent(), group, has_property(), is_in_folded_group(), LEV_GROUP, NULp, parent, and PROP_IS_FOLDED.

Referenced by add_area_for_gde(), ED4_search_cb(), ED4_cursor::is_hidden_inside_group(), is_in_folded_group(), and toggle_cursor_group_folding().

virtual bool ED4_base::is_hidden ( ) const

pure virtual

Implemented in ED4_terminal, ED4_manager, and FINAL_TYPE< SEQTYPE >.

Referenced by update_group_folding().

char * ED4_base::get_name_of_species ( )

Definition at line 680 of file ED4_base.cxx.

References GB_read_as_string(), get_parent(), LEV_SPECIES, LEV_SPECIES_NAME, NULp, ED4_manager::search_spec_child_rek(), and ta.

Referenced by EDB_root_bact::search_sequence_data_rek(), and trace_termChange_in_global_awar().

ED4_terminal * ED4_base::get_next_terminal ( )

Definition at line 454 of file ED4_base.cxx.

References ED4_manager::get_first_terminal(), get_next_terminal(), index, NULp, and parent.

Referenced by add_area_for_gde(), ED4_mark_matching_species(), ED4_search_cb(), get_next_terminal(), highlight_and_update(), PV_AddOrfTerminalsToLoadedSpecies(), PV_CreateAllTerminals(), PV_DisplayAminoAcidNames(), PV_HideAllTerminals(), PV_ManageTerminals(), PV_SaveData(), and PV_SequenceUpdate_CB().

ED4_terminal * ED4_base::get_prev_terminal ( )

Definition at line 467 of file ED4_base.cxx.

References ED4_manager::get_last_terminal(), get_prev_terminal(), index, NULp, and parent.

Referenced by ED4_search_cb(), and get_prev_terminal().

void ED4_base::generate_configuration_string ( GBS_strstruct & buffer )

virtual void ED4_base::remove_callbacks ( )

pure virtual

Implemented in ED4_terminal, and ED4_manager.

Referenced by ED4_manager::remove_callbacks().

const ED4_terminal * ED4_base::get_consensus_relevant_terminal ( ) const

Definition at line 619 of file ED4_base.cxx.

References e4_assert, get_consensus_relevant_terminal(), has_property(), is_terminal(), ED4_container::member(), ED4_container::members(), NULp, and PROP_CONSENSUS_RELEVANT.

Referenced by ED4_manager::check_in_bases(), ED4_manager::check_out_bases(), ED4_manager::create_consensus(), get_consensus_relevant_terminal(), EDB_root_bact::search_sequence_data_rek(), ED4_manager::update_bases(), and ED4_manager::update_bases_and_rebuild_consensi().

int ED4_base::is_terminal ( ) const

inline

Definition at line 1076 of file ed4_class.hxx.

References e4_assert, knownNonNull(), PROP_IS_TERMINAL, and ED4_objspec::static_prop.

Referenced by ED4_root::announce_deletion(), diff_type_changed_cb(), get_consensus_relevant_terminal(), ED4_manager::get_first_terminal(), ED4_manager::get_last_terminal(), request_terminal_refresh(), and ED4_container::search_target_species().

int ED4_base::is_text_terminal ( ) const

inline

Definition at line 1078 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_COL_STAT, LEV_PURE_TEXT, LEV_SEQUENCE_INFO, LEV_SEQUENCE_STRING, LEV_SPECIES_NAME, and ED4_objspec::level.

Referenced by executeKeystroke().

int ED4_base::is_species_name_terminal ( ) const

inline

Definition at line 1080 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_SPECIES_NAME, and ED4_objspec::level.

Referenced by add_area_for_gde(), add_species_to_merge_list(), ED4_text_terminal::draw(), ED4_terminal::event_sent_by_parent(), generate_configuration_string(), highlight_and_update(), and PV_AddOrfTerminalsToLoadedSpecies().

int ED4_base::is_sequence_info_terminal ( ) const

inline

Definition at line 1082 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_SEQUENCE_INFO, and ED4_objspec::level.

Referenced by dot_sequence_by_consensus().

int ED4_base::is_sequence_terminal ( ) const

inline

int ED4_base::is_orf_terminal ( ) const

inline

Definition at line 1084 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_ORF, and ED4_objspec::level.

Referenced by PV_HideAllTerminals(), PV_ManageTerminals(), and PV_SequenceUpdate_CB().

int ED4_base::is_pure_text_terminal ( ) const

inline

Definition at line 1086 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_PURE_TEXT, and ED4_objspec::level.

Referenced by ED4_text_terminal::draw(), and executeKeystroke().

int ED4_base::is_columnStat_terminal ( ) const

inline

Definition at line 1087 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_COL_STAT, and ED4_objspec::level.

Referenced by executeKeystroke().

int ED4_base::is_bracket_terminal ( ) const

inline

Definition at line 1089 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_BRACKET, and ED4_objspec::level.

Referenced by ED4_terminal::event_sent_by_parent().

int ED4_base::is_spacer_terminal ( ) const

inline

Definition at line 1090 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_SPACER, and ED4_objspec::level.

Referenced by ED4_manager::hide_children(), PV_AddOrfTerminalsToLoadedSpecies(), and ED4_container::search_target_species().

int ED4_base::is_line_terminal ( ) const

inline

Definition at line 1091 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_LINE, and ED4_objspec::level.

int ED4_base::is_flag_header_terminal ( ) const

inline

Definition at line 1093 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_FLAG_HEADER, and ED4_objspec::level.

Referenced by ED4_text_terminal::draw().

int ED4_base::is_flag_terminal ( ) const

inline

Definition at line 1094 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_FLAG, and ED4_objspec::level.

Referenced by ED4_terminal::event_sent_by_parent().

int ED4_base::is_sequence_manager ( ) const

inline

Definition at line 1098 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_SEQUENCE, and ED4_objspec::level.

int ED4_base::is_multi_name_manager ( ) const

inline

Definition at line 1099 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_MULTI_NAME, and ED4_objspec::level.

int ED4_base::is_name_manager ( ) const

inline

Definition at line 1100 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_NAME_MANAGER, and ED4_objspec::level.

int ED4_base::is_multi_species_manager ( ) const

inline

Definition at line 1101 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_MULTI_SPECIES, and ED4_objspec::level.

Referenced by createGroupFromSelected(), force_group_update(), ED4_manager::get_defined_level(), ED4_manager::handle_move(), ED4_manager::move_requested_by_child(), ED4_container::search_target_species(), and ED4_group_manager::unfold().

int ED4_base::is_multi_sequence_manager ( ) const

inline

Definition at line 1102 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_MULTI_SEQUENCE, and ED4_objspec::level.

int ED4_base::is_device_manager ( ) const

inline

Definition at line 1103 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_DEVICE, and ED4_objspec::level.

int ED4_base::is_group_manager ( ) const

inline

Definition at line 1105 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_GROUP, and ED4_objspec::level.

Referenced by calc_group_depth(), ED4_manager::check_in_bases(), ED4_manager::check_out_bases(), ED4_multi_species_manager::count_visible_children(), ED4_manager::create_consensus(), ED4_multi_species_manager::deselect_all_species_and_SAI(), ED4_bracket_terminal::draw(), generate_configuration_string(), ED4_manager::get_defined_level(), ED4_manager::handle_move(), ED4_multi_species_manager::invert_selection_of_all_species(), ED4_multi_species_manager::marked_species_select(), ED4_manager::move_requested_by_child(), ED4_manager::rebuild_consensi(), ED4_container::search_target_species(), ED4_multi_species_manager::select_all(), ED4_multi_species_manager::selected_species_mark(), set_width(), ED4_manager::update_bases(), update_group_folding(), and ED4_multi_species_manager::update_requested_children().

int ED4_base::is_root_group_manager ( ) const

inline

Definition at line 1106 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_ROOTGROUP, and ED4_objspec::level.

Referenced by ED4_manager::check_in_bases(), ED4_manager::check_out_bases(), ED4_container::search_target_species(), ED4_manager::update_bases(), and ED4_multi_species_manager::update_requested_children().

int ED4_base::is_abstract_group_manager ( ) const

inline

Definition at line 1107 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_GROUP, LEV_ROOTGROUP, and ED4_objspec::level.

Referenced by change_char_table_length(), and ED4_manager::create_consensus().

int ED4_base::is_species_manager ( ) const

inline

Definition at line 1109 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_SPECIES, and ED4_objspec::level.

Referenced by add_species_to_list_cb(), ED4_manager::check_in_bases(), ED4_manager::check_out_bases(), ED4_multi_species_manager::count_visible_children(), ED4_manager::create_consensus(), createGroupFromSelected(), ED4_manager::deleted_from_database(), ED4_multi_species_manager::deselect_all_species_and_SAI(), do_sth_with_species(), ED4_multi_species_manager::invert_selection_of_all_species(), is_consensus_manager(), is_SAI_manager(), is_species_seq_manager(), ED4_multi_species_manager::marked_species_select(), ED4_container::search_target_species(), ED4_multi_species_manager::select_all(), ED4_multi_species_manager::selected_species_mark(), set_width(), ED4_manager::update_bases(), and ED4_manager::update_bases_and_rebuild_consensi().

int ED4_base::is_area_manager ( ) const

inline

Definition at line 1110 of file ed4_class.hxx.

References e4_assert, knownNonNull(), LEV_AREA, and ED4_objspec::level.

Referenced by calc_group_depth(), ED4_terminal::event_sent_by_parent(), ED4_manager::move_requested_by_child(), EDB_root_bact::save_current_config(), and ED4_container::search_target_species().

ED4_base::E4B_DECL_CASTOP ( area_manager )

ED4_base::E4B_DECL_CASTOP ( abstract_group_manager )

ED4_base::E4B_DECL_CASTOP ( bracket_terminal )

ED4_base::E4B_DECL_CASTOP ( columnStat_terminal )

ED4_base::E4B_DECL_CASTOP ( consensus_sequence_terminal )

ED4_base::E4B_DECL_CASTOP ( device_manager )

ED4_base::E4B_DECL_CASTOP ( group_manager )

ED4_base::E4B_DECL_CASTOP ( line_terminal )

ED4_base::E4B_DECL_CASTOP ( manager )

ED4_base::E4B_DECL_CASTOP ( multi_name_manager )

ED4_base::E4B_DECL_CASTOP ( multi_sequence_manager )

ED4_base::E4B_DECL_CASTOP ( multi_species_manager )

ED4_base::E4B_DECL_CASTOP ( name_manager )

ED4_base::E4B_DECL_CASTOP ( orf_terminal )

ED4_base::E4B_DECL_CASTOP ( pure_text_terminal )

ED4_base::E4B_DECL_CASTOP ( root_group_manager )

ED4_base::E4B_DECL_CASTOP ( sequence_info_terminal )

ED4_base::E4B_DECL_CASTOP ( sequence_manager )

ED4_base::E4B_DECL_CASTOP ( sequence_terminal )

ED4_base::E4B_DECL_CASTOP ( spacer_terminal )

ED4_base::E4B_DECL_CASTOP ( species_manager )

ED4_base::E4B_DECL_CASTOP ( species_name_terminal )

ED4_base::E4B_DECL_CASTOP ( terminal )

ED4_base::E4B_DECL_CASTOP ( text_terminal )

ED4_base::E4B_DECL_CASTOP ( flag_header_terminal )

ED4_base::E4B_DECL_CASTOP ( flag_terminal )

ED4_species_manager * ED4_base::containing_species_manager ( ) const

inline

Definition at line 1830 of file ed4_class.hxx.

References get_parent(), LEV_SPECIES, and NULp.

Referenced by ED4_text_terminal::draw(), ED4_get_highlighted_range(), ED4_terminal::event_sent_by_parent(), get_species_type(), and highlight_and_update().

bool ED4_base::is_consensus_manager ( ) const

inline

Definition at line 1835 of file ed4_class.hxx.

References ED4_SP_CONSENSUS, and is_species_manager().

Referenced by createGroupFromSelected(), ED4_group_manager::fold(), generate_configuration_string(), ED4_multi_species_manager::get_consensus_manager(), group_species(), ED4_manager::handle_move(), ED4_manager::hide_children(), ED4_manager::rebuild_consensi(), rebuild_consensus(), request_sequence_refresh(), ED4_container::search_target_species(), and toggle_consensus_display().

bool ED4_base::is_SAI_manager ( ) const

inline

Definition at line 1836 of file ed4_class.hxx.

References ED4_SP_SAI, and is_species_manager().

bool ED4_base::is_species_seq_manager ( ) const

inline

Definition at line 1837 of file ed4_class.hxx.

References ED4_SP_SPECIES, and is_species_manager().

ED4_species_type ED4_base::get_species_type ( ) const

inline

Definition at line 1839 of file ed4_class.hxx.

References containing_species_manager(), and ED4_SP_NONE.

Referenced by generate_configuration_string(), inside_consensus_manager(), inside_SAI_manager(), and inside_species_seq_manager().

bool ED4_base::inside_consensus_manager ( ) const

inline

Definition at line 1844 of file ed4_class.hxx.

References ED4_SP_CONSENSUS, and get_species_type().

Referenced by is_consensus_terminal().

bool ED4_base::inside_SAI_manager ( ) const

inline

Definition at line 1845 of file ed4_class.hxx.

References ED4_SP_SAI, and get_species_type().

Referenced by is_SAI_named(), and is_SAI_terminal().

bool ED4_base::inside_species_seq_manager ( ) const

inline

Definition at line 1846 of file ed4_class.hxx.

References ED4_SP_SPECIES, and get_species_type().

Referenced by ED4_text_terminal::draw(), is_species_named(), and is_species_seq_terminal().

bool ED4_base::is_consensus_terminal ( ) const

inline

Definition at line 1848 of file ed4_class.hxx.

References inside_consensus_manager(), and is_sequence_terminal().

Referenced by add_area_for_gde(), create_new_species(), detect_current_ref_terminal(), ED4_setColumnblockCorner(), executeKeystroke(), acceptConsensusTerminal::fulfilled_by(), is_consensus_sequence_terminal(), and set_diff_reference().

bool ED4_base::is_SAI_terminal ( ) const

inline

Definition at line 1849 of file ed4_class.hxx.

References inside_SAI_manager(), and is_sequence_terminal().

Referenced by add_area_for_gde(), detect_current_ref_terminal(), and set_diff_reference().

bool ED4_base::is_species_seq_terminal ( ) const

inline

Definition at line 1850 of file ed4_class.hxx.

References inside_species_seq_manager(), and is_sequence_terminal().

Referenced by call_edit(), detect_current_ref_terminal(), PV_ManageTerminals(), and set_diff_reference().

bool ED4_base::is_consensus_sequence_terminal ( ) const

inline

Definition at line 1182 of file ed4_class.hxx.

References is_consensus_terminal().

Referenced by ED4_reference::reference_is_a_consensus().

Member Data Documentation

ED4_manager* ED4_base::parent

Definition at line 916 of file ed4_class.hxx.

Referenced by ED4_root::add_to_highlighted(), calc_group_depth(), ED4_container::clear(), ED4_terminal::Delete(), ED4_manager::delete_requested_by_child(), ED4_manager::deleted_from_database(), ED4_text_terminal::deleted_from_database(), ED4_sequence_terminal::deleted_from_database(), ED4_bracket_terminal::draw(), ED4_base(), ED4_set_protection(), get_next_terminal(), get_parent(), get_prev_terminal(), get_upper_lower_cursor_pos(), ED4_manager::handle_move(), has_parent(), ED4_manager::is_hidden(), ED4_terminal::is_hidden(), is_in_folded_group(), ED4_terminal::kill_object(), ED4_manager::move_requested_by_child(), ED4_manager::rebuild_consensi(), ED4_manager::refresh_requested_by_child(), remove_from_consensus(), ED4_container::remove_member(), ED4_manager::request_refresh(), ED4_terminal::request_refresh(), ED4_container::search_target_species(), set_width(), toggle_consensus_display(), ED4_bracket_terminal::toggle_folding(), toggle_helix_for_SAI(), unlink_from_parent(), ED4_manager::update_requested_by_child(), ED4_multi_species_manager::update_requested_children(), and ~ED4_base().

ED4_properties ED4_base::dynamic_prop

Definition at line 919 of file ed4_class.hxx.

Referenced by call_edit(), and ED4_base().

char* ED4_base::id

Definition at line 920 of file ed4_class.hxx.

Referenced by multi_species_man_consensus_id_starts_with(), ED4_manager::refresh_flag_ok(), ED4_terminal::resolve_pointer_to_char_pntr(), and set_current_as_diffRef().

ED4_index ED4_base::index

Definition at line 921 of file ed4_class.hxx.

Referenced by ED4_container::append_member(), ED4_base(), get_next_terminal(), get_prev_terminal(), ED4_container::insert_member(), ED4_container::members_ok(), ED4_container::move_member(), and ED4_container::remove_member().

ED4_base* ED4_base::width_link

Definition at line 922 of file ed4_class.hxx.

Referenced by ED4_terminal::calc_bounding_box(), ED4_base(), resize_requested_by_link(), set_links(), and ~ED4_base().

ED4_base* ED4_base::height_link

Definition at line 923 of file ed4_class.hxx.

Referenced by ED4_terminal::calc_bounding_box(), ED4_base(), resize_requested_by_link(), set_links(), and ~ED4_base().

ED4_extension ED4_base::extension

ED4_update_info ED4_base::update_info

Definition at line 925 of file ed4_class.hxx.

Referenced by ED4_manager::clear_refresh(), ED4_terminal::Delete(), ED4_manager::delete_requested_by_child(), ED4_manager::delete_requested_children(), ED4_terminal::delete_requested_children(), ED4_multi_species_manager::delete_requested_children(), ED4_base(), ED4_manager::refresh_flag_ok(), ED4_manager::refresh_requested_by_child(), ED4_manager::request_refresh(), ED4_terminal::request_refresh(), request_resize(), ED4_manager::resize_requested_by_child(), ED4_manager::resize_requested_children(), ED4_terminal::resize_requested_children(), ED4_root_group_manager::resize_requested_children(), ED4_window::set_scrolled_rectangle(), set_update(), ED4_manager::Show(), ED4_terminal::Show(), ED4_manager::update_requested_by_child(), ED4_manager::update_requested_children(), ED4_multi_species_manager::update_requested_children(), and ~ED4_base().

unsigned int ED4_base::hidden

Definition at line 927 of file ed4_class.hxx.

Referenced by ED4_manager::calc_bounding_box(), executeKeystroke(), get_upper_lower_cursor_pos(), ED4_manager::hide_children(), PV_SaveData(), ED4_container::search_target_species(), ED4_manager::Show(), and ED4_manager::unhide_children().

struct { ... } ED4_base::flag

Referenced by ED4_manager::calc_bounding_box(), executeKeystroke(), get_upper_lower_cursor_pos(), ED4_manager::hide_children(), PV_SaveData(), ED4_container::search_target_species(), ED4_manager::Show(), and ED4_manager::unhide_children().

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Public Attributes

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation