Mismatches Class Reference

Public Member Functions
	Mismatches (MatchRequest &req_)
void	count_weighted (char probe, char seq, int height)
void	count_versus (const ReadableDataLoc &loc, const char *probe, int height)
bool	accepted () const
int	get_plain () const
int	get_ambig () const
double	get_weighted () const
PT_local &	get_PT_local () const

Detailed Description

Definition at line 28 of file PT_match.cxx.

Constructor & Destructor Documentation

Mismatches::Mismatches ( MatchRequest &  req_ )

inline

Definition at line 38 of file PT_match.cxx.

Member Function Documentation

void Mismatches::count_weighted ( char  probe, char  seq, int  height  )

inline

Definition at line 121 of file PT_match.cxx.

References MatchRequest::get_mismatch_weight(), is_ambig_base(), probe_struct_global::pos_to_weight, and psg.

Referenced by MatchRequest::collect_hits_for(), and count_versus().

void Mismatches::count_versus	(	const ReadableDataLoc &	loc,
		const char *	probe,
		int	height
	)

Definition at line 190 of file PT_match.cxx.

References count_weighted(), pt_assert, and PT_QU.

Referenced by MatchRequest::collect_hits_for().

bool Mismatches::accepted ( ) const

inline

Definition at line 129 of file PT_match.cxx.

References MatchRequest::accept_N_mismatches(), MatchRequest::allowed_mismatches(), get_PT_local(), and PT_MATCH_TYPE_INTEGER.

Referenced by MatchRequest::add_hits_for_children(), and MatchRequest::collect_hits_for().

int Mismatches::get_plain ( ) const

inline

Definition at line 45 of file PT_match.cxx.

Referenced by MatchRequest::add_hit().

int Mismatches::get_ambig ( ) const

inline

Definition at line 46 of file PT_match.cxx.

Referenced by MatchRequest::add_hit().

double Mismatches::get_weighted ( ) const

inline

Definition at line 48 of file PT_match.cxx.

Referenced by MatchRequest::add_hit().

PT_local & Mismatches::get_PT_local ( ) const

inline

Definition at line 136 of file PT_match.cxx.

References MatchRequest::get_PT_local().

Referenced by accepted().

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The documentation for this class was generated from the following file:

• PROBE/PT_match.cxx