ED4_remap Class Reference

#include <ed4_class.hxx>

Inheritance diagram for ED4_remap:

Collaboration diagram for ED4_remap:

Public Member Functions
	ED4_remap ()
	~ED4_remap ()
int	screen_to_sequence (int screen_pos) const
int	sequence_to_screen_PLAIN (int sequence_pos) const
int	shown_sequence_to_screen (int sequence_pos) const
int	clipped_sequence_to_screen_PLAIN (int sequence_pos) const
int	sequence_to_screen (int sequence_pos) const
PosRange	sequence_to_screen (PosRange range) const
PosRange	screen_to_sequence (PosRange range) const
size_t	get_max_screen_pos () const
void	adjacent_screen_positions (int seq_pos, int &screen_pos_left, int &screen_pos_right)
ED4_remap_mode	get_mode () const
void	set_mode (ED4_remap_mode Mode, int above_percent)
void	mark_compile_needed ()
void	mark_compile_needed_force ()
bool	compile_needed () const
bool	compile (ED4_root_group_manager *gm)
bool	is_shown (int seq_pos) const
ExplicitRange	clip_screen_range (PosRange screen_range) const

Detailed Description

Definition at line 1684 of file ed4_class.hxx.

Constructor & Destructor Documentation

ED4_remap::ED4_remap

(

)

Definition at line 1630 of file ED4_manager.cxx.

References ED4_RM_NONE, and MAXSEQUENCECHARACTERLENGTH.

ED4_remap::~ED4_remap

(

)

Definition at line 1646 of file ED4_manager.cxx.

Member Function Documentation

int ED4_remap::screen_to_sequence

(

int

screen_pos

)

const

Definition at line 1650 of file ED4_manager.cxx.

References e4_assert.

Referenced by ED4_jump_to_cursor_position(), ED4_setColumnblockCorner(), ED4_show_helix_on_device(), ED4_show_protein_match_on_device(), ED4_Edit_String::edit(), and ED4_cursor::get_sequence_pos().

int ED4_remap::sequence_to_screen_PLAIN ( int  sequence_pos ) const

inline

Definition at line 1709 of file ed4_class.hxx.

References e4_assert.

Referenced by adjacent_screen_positions(), clipped_sequence_to_screen_PLAIN(), ED4_Edit_String::edit(), and sequence_to_screen().

int ED4_remap::shown_sequence_to_screen ( int  sequence_pos ) const

inline

Definition at line 1713 of file ed4_class.hxx.

References e4_assert.

Referenced by ED4_resize_all_extensions().

int ED4_remap::clipped_sequence_to_screen_PLAIN

(

int

sequence_pos

)

const

Definition at line 1657 of file ED4_manager.cxx.

References sequence_to_screen_PLAIN().

int ED4_remap::sequence_to_screen

(

int

sequence_pos

)

const

Definition at line 1666 of file ED4_manager.cxx.

References sequence_to_screen_PLAIN().

Referenced by ED4_setColumnblockCorner(), ED4_cursor::jump_sequence_pos(), and ED4_cursor::set_to_terminal().

PosRange ED4_remap::sequence_to_screen ( PosRange  range ) const

inline

Definition at line 1723 of file ed4_class.hxx.

References e4_assert, PosRange::end(), PosRange::is_empty(), and PosRange::start().

PosRange ED4_remap::screen_to_sequence ( PosRange  range ) const

inline

Definition at line 1727 of file ed4_class.hxx.

References e4_assert, PosRange::end(), PosRange::from(), PosRange::is_empty(), PosRange::is_unlimited(), and PosRange::start().

size_t ED4_remap::get_max_screen_pos ( ) const

inline

Definition at line 1733 of file ed4_class.hxx.

Referenced by ED4_jump_to_cursor_position(), ED4_show_helix_on_device(), ED4_cursor::get_sequence_pos(), and ED4_root::pixel2pos().

void ED4_remap::adjacent_screen_positions	(	int	seq_pos,
		int &	screen_pos_left,
		int &	screen_pos_right
	)

Definition at line 1672 of file ED4_manager.cxx.

References e4_assert, is_shown(), and sequence_to_screen_PLAIN().

Referenced by ED4_cursor::jump_sequence_pos().

ED4_remap_mode ED4_remap::get_mode ( ) const

inline

Definition at line 1737 of file ed4_class.hxx.

Referenced by compile().

void ED4_remap::set_mode ( ED4_remap_mode  Mode, int  above_percent  )

inline

Definition at line 1738 of file ed4_class.hxx.

References ED4_RM_MODES, ED4_RM_NONE, and ED4_RM_SHOW_ABOVE.

Referenced by ED4_compression_changed_cb(), and ED4_root_group_manager::ED4_root_group_manager().

void ED4_remap::mark_compile_needed

(

)

Definition at line 1700 of file ED4_manager.cxx.

References ED4_RM_NONE, and mark_compile_needed_force().

Referenced by ED4_manager::update_bases().

void ED4_remap::mark_compile_needed_force

(

)

Definition at line 1692 of file ED4_manager.cxx.

References ED4_ROOT, ED4_manager::resize_requested_by_child(), and ED4_root::root_group_man.

Referenced by ED4_root::create_hierarchy(), ED4_alignment_length_changed(), ED4_root_group_manager::ED4_root_group_manager(), and mark_compile_needed().

bool ED4_remap::compile_needed ( ) const

inline

Definition at line 1757 of file ed4_class.hxx.

Referenced by ED4_cursor::jump_sequence_pos(), and ED4_root_group_manager::update_remap().

bool ED4_remap::compile

(

ED4_root_group_manager *

gm

)

Definition at line 1704 of file ED4_manager.cxx.

References BaseFrequencies::added_sequences(), aw_message(), BaseFrequencies::bases_and_gaps_at(), e4_assert, ED4_RM_DYNAMIC_GAPS, ED4_RM_MAX_ALIGN, ED4_RM_MAX_EDIT, ED4_RM_NONE, ED4_RM_SHOW_ABOVE, FALLTHROUGH, fputs(), get_mode(), MAXSEQUENCECHARACTERLENGTH, NULp, ED4_root_group_manager::remap(), BaseFrequencies::size(), and ED4_abstract_group_manager::table().

Referenced by ED4_root_group_manager::update_remap().

bool ED4_remap::is_shown ( int  seq_pos ) const

inline

Definition at line 1761 of file ed4_class.hxx.

Referenced by adjacent_screen_positions(), and ED4_cursor::jump_sequence_pos().

ExplicitRange ED4_remap::clip_screen_range ( PosRange  screen_range ) const

inline

Definition at line 1770 of file ed4_class.hxx.

Referenced by ED4_setColumnblockCorner().

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The documentation for this class was generated from the following files:

• EDIT4/ed4_class.hxx
• EDIT4/ED4_manager.cxx