ARB
Public Member Functions | List of all members
PT_FamilyFinder Class Reference

#include <awtc_next_neighbours.hxx>

Inheritance diagram for PT_FamilyFinder:
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Collaboration diagram for PT_FamilyFinder:
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Public Member Functions

 PT_FamilyFinder (GBDATA *gb_main_, int server_id_, int oligo_len_, int mismatches_, bool fast_flag_, bool rel_matches_, RelativeScoreScaling scaling_)
 
 ~PT_FamilyFinder () OVERRIDE
 
GB_ERROR searchFamily (const char *sequence, FF_complement compl_mode, int max_results, double min_score) OVERRIDE __ATTR__USERESULT
 
const charresults2string ()
 
- Public Member Functions inherited from FamilyFinder
 FamilyFinder (bool rel_matches_, RelativeScoreScaling scaling_)
 
virtual ~FamilyFinder ()
 
void restrict_2_region (const PosRange &range_)
 
void unrestrict ()
 
const PosRangeget_TargetRange () const
 
const FamilyListgetFamilyList () const
 
void delete_family_list ()
 
bool hits_were_truncated () const
 
bool uses_rel_matches () const
 
RelativeScoreScaling get_scaling () const
 
int getRealHits () const
 

Additional Inherited Members

- Protected Attributes inherited from FamilyFinder
FamilyListfamily_list
 
bool hits_truncated
 
long real_hits
 
PosRange range
 

Detailed Description

Definition at line 92 of file awtc_next_neighbours.hxx.

Constructor & Destructor Documentation

PT_FamilyFinder::PT_FamilyFinder ( GBDATA gb_main_,
int  server_id_,
int  oligo_len_,
int  mismatches_,
bool  fast_flag_,
bool  rel_matches_,
RelativeScoreScaling  scaling_ 
)

Definition at line 111 of file AWTC_next_neighbours.cxx.

PT_FamilyFinder::~PT_FamilyFinder ( )

Definition at line 126 of file AWTC_next_neighbours.cxx.

References FamilyFinder::delete_family_list().

Member Function Documentation

GB_ERROR PT_FamilyFinder::searchFamily ( const char sequence,
FF_complement  compl_mode,
int  max_results,
double  min_score 
)
virtual
const char * PT_FamilyFinder::results2string ( )

The documentation for this class was generated from the following files: