#include <awtc_next_neighbours.hxx>
Inheritance diagram for PT_FamilyFinder:
Collaboration diagram for PT_FamilyFinder:
Public Member Functions | |
| PT_FamilyFinder (GBDATA *gb_main_, int server_id_, int oligo_len_, int mismatches_, bool fast_flag_, bool rel_matches_, RelativeScoreScaling scaling_) | |
| ~PT_FamilyFinder () OVERRIDE | |
| GB_ERROR | searchFamily (const char *sequence, FF_complement compl_mode, int max_results, double min_score) OVERRIDE __ATTR__USERESULT |
| const char * | results2string () |
 Public Member Functions inherited from FamilyFinder | |
| FamilyFinder (bool rel_matches_, RelativeScoreScaling scaling_) | |
| virtual | ~FamilyFinder () |
| void | restrict_2_region (const PosRange &range_) |
| void | unrestrict () |
| const PosRange & | get_TargetRange () const |
| const FamilyList * | getFamilyList () const |
| void | delete_family_list () |
| bool | hits_were_truncated () const |
| bool | uses_rel_matches () const |
| RelativeScoreScaling | get_scaling () const |
| int | getRealHits () const |
Additional Inherited Members | |
| Protected Attributes inherited from FamilyFinder | |
| FamilyList * | family_list |
| bool | hits_truncated |
| long | real_hits |
| PosRange | range |
Detailed Description
Definition at line 90 of file awtc_next_neighbours.hxx.
Constructor & Destructor Documentation
| PT_FamilyFinder::PT_FamilyFinder | ( | GBDATA * | gb_main_, |
| int | server_id_, | ||
| int | oligo_len_, | ||
| int | mismatches_, | ||
| bool | fast_flag_, | ||
| bool | rel_matches_, | ||
| RelativeScoreScaling | scaling_ | ||
| ) |
Definition at line 111 of file AWTC_next_neighbours.cxx.
| PT_FamilyFinder::~PT_FamilyFinder | ( | ) |
Definition at line 126 of file AWTC_next_neighbours.cxx.
References FamilyFinder::delete_family_list().
Member Function Documentation
|
virtual |
Implements FamilyFinder.
Definition at line 267 of file AWTC_next_neighbours.cxx.
References error(), GBS_ptserver_tag(), PosRange::is_empty(), NULp, and FamilyFinder::range.
Referenced by awtc_nn_search(), and awtc_nn_search_all_listed().
| const char * PT_FamilyFinder::results2string | ( | ) |
Definition at line 289 of file AWTC_next_neighbours.cxx.
References GBS_strstruct::cut_tail(), FamilyFinder::family_list, FamilyList::next, GBS_strstruct::nprintf(), GBS_strstruct::release(), and RETURN_LOCAL_ALLOC.
The documentation for this class was generated from the following files:
