Public Member Functions | List of all members
PT_FamilyFinder Class Reference

#include <awtc_next_neighbours.hxx>

Inheritance diagram for PT_FamilyFinder:
Inheritance graph
Collaboration diagram for PT_FamilyFinder:
Collaboration graph

Public Member Functions

 PT_FamilyFinder (GBDATA *gb_main_, int server_id_, int oligo_len_, int mismatches_, bool fast_flag_, bool rel_matches_, RelativeScoreScaling scaling_)
 ~PT_FamilyFinder () OVERRIDE
GB_ERROR searchFamily (const char *sequence, FF_complement compl_mode, int max_results, double min_score) OVERRIDE __ATTR__USERESULT
const charresults2string ()
- Public Member Functions inherited from FamilyFinder
 FamilyFinder (bool rel_matches_, RelativeScoreScaling scaling_)
virtual ~FamilyFinder ()
void restrict_2_region (const PosRange &range_)
void unrestrict ()
const PosRangeget_TargetRange () const
const FamilyListgetFamilyList () const
void delete_family_list ()
bool hits_were_truncated () const
bool uses_rel_matches () const
RelativeScoreScaling get_scaling () const
int getRealHits () const

Additional Inherited Members

- Protected Attributes inherited from FamilyFinder
bool hits_truncated
long real_hits
PosRange range

Detailed Description

Definition at line 92 of file awtc_next_neighbours.hxx.

Constructor & Destructor Documentation

PT_FamilyFinder::PT_FamilyFinder ( GBDATA gb_main_,
int  server_id_,
int  oligo_len_,
int  mismatches_,
bool  fast_flag_,
bool  rel_matches_,
RelativeScoreScaling  scaling_ 

Definition at line 111 of file AWTC_next_neighbours.cxx.

PT_FamilyFinder::~PT_FamilyFinder ( )

Definition at line 126 of file AWTC_next_neighbours.cxx.

References FamilyFinder::delete_family_list().

Member Function Documentation

GB_ERROR PT_FamilyFinder::searchFamily ( const char sequence,
FF_complement  compl_mode,
int  max_results,
double  min_score 
const char * PT_FamilyFinder::results2string ( )

The documentation for this class was generated from the following files: