ARB: BasePosition Class Reference

ARB

#include <BI_basepos.hxx>

Inheritance diagram for BasePosition:

Inheritance graph

Collaboration diagram for BasePosition:

Collaboration graph

Public Member Functions
void	initialize (const char *seq, int size)

void	initialize (const char *seq, int size, const CharPredicate &is_gap)

	BasePosition ()

	BasePosition (const char *seq, int size)

	BasePosition (const char *seq, int size, const CharPredicate &is_gap)

	~BasePosition ()

bool	gotData () const

int	abs_2_rel (int abs) const

int	rel_2_abs (int rel) const

int	first_base_abspos () const

int	last_base_abspos () const

int	base_count () const

int	abs_count () const

Detailed Description

Definition at line 46 of file BI_basepos.hxx.

Constructor & Destructor Documentation

BasePosition::BasePosition ( )

inline

Definition at line 69 of file BI_basepos.hxx.

BasePosition::BasePosition	(	const char *	seq,
		int	size
	)

inline

Definition at line 70 of file BI_basepos.hxx.

References initialize().

BasePosition::BasePosition	(	const char *	seq,
		int	size,
		const CharPredicate &	is_gap
	)

inline

Definition at line 71 of file BI_basepos.hxx.

References initialize().

BasePosition::~BasePosition ( )

inline

Definition at line 72 of file BI_basepos.hxx.

Member Function Documentation

void BasePosition::initialize	(	const char *	seq,
		int	size
	)

Definition at line 22 of file BI_basepos.cxx.

References is_Gap().

Referenced by BasePosition(), and BI_ecoli_ref::init().

void BasePosition::initialize	(	const char *	seq,
		int	size,
		const CharPredicate &	is_gap
	)

Definition at line 27 of file BI_basepos.cxx.

References CharPredicate::applies(), and bi_assert.

bool BasePosition::gotData ( ) const

inline

Definition at line 74 of file BI_basepos.hxx.

Referenced by abs_2_rel(), ED4_jump_to_cursor_position(), and rel_2_abs().

int BasePosition::abs_2_rel ( int abs ) const

inline

Definition at line 76 of file BI_basepos.hxx.

References abs, bi_assert, and gotData().

Referenced by CompactedSequence::CompactedSequence(), CompactedSequence::compPosition(), CursorPositionChanged_CB(), ED4_jump_to_cursor_position(), ED4_base_position::get_base_position(), Structure3D::MapSaiToEcoliTemplate(), Structure3D::MapSearchStringsToEcoliTemplate(), SEC_root::paint(), and PT_abs_2_ecoli_rel().

int BasePosition::rel_2_abs ( int rel ) const

inline

Definition at line 87 of file BI_basepos.hxx.

References bi_assert, and gotData().

Referenced by CompactedSequence::CompactedSequence(), ED4_jump_to_cursor_position(), CompactedSequence::expdPosition(), first_base_abspos(), ED4_base_position::get_sequence_position(), and last_base_abspos().

int BasePosition::first_base_abspos ( ) const

inline

Definition at line 97 of file BI_basepos.hxx.

References rel_2_abs().

Referenced by CompactedSequence::CompactedSequence().

int BasePosition::last_base_abspos ( ) const

inline

Definition at line 98 of file BI_basepos.hxx.

References rel_2_abs().

Referenced by CompactedSequence::CompactedSequence().

int BasePosition::base_count ( ) const

inline

Definition at line 100 of file BI_basepos.hxx.

Referenced by ED4_base_position::get_base_count(), and CompactedSequence::length().

int BasePosition::abs_count ( ) const

inline

Definition at line 101 of file BI_basepos.hxx.

Referenced by CompactedSequence::expdPosition(), ED4_base_position::get_abs_len(), and CompactedSequence::no_of_gaps_after().

The documentation for this class was generated from the following files:

SL/HELIX/BI_basepos.hxx
SL/HELIX/BI_basepos.cxx