ProbeIterator Class Reference

Public Member Functions
	ProbeIterator (const char *seq, size_t seqlen, size_t probelen_)
bool	next ()
int	get_temperature () const
bool	gc_in_wanted_range (PT_pdc *pdc) const
bool	temperature_in_wanted_range (PT_pdc *pdc) const
bool	feasible (PT_pdc *pdc) const
const ProbeOccurrence &	occurrence () const
void	dump (FILE *out) const

Detailed Description

Definition at line 1160 of file PT_new_design.cxx.

Constructor & Destructor Documentation

ProbeIterator::ProbeIterator ( const char *  seq, size_t  seqlen, size_t  probelen_  )

inline

Definition at line 1199 of file PT_new_design.cxx.

References pt_assert.

Member Function Documentation

bool ProbeIterator::next ( )

inline

Definition at line 1208 of file PT_new_design.cxx.

References ProbeOccurrence::forward().

Referenced by ProbeCandidates::generate_for_sequence().

int ProbeIterator::get_temperature ( ) const

inline

Definition at line 1217 of file PT_new_design.cxx.

Referenced by temperature_in_wanted_range().

bool ProbeIterator::gc_in_wanted_range ( PT_pdc *  pdc ) const

inline

Definition at line 1219 of file PT_new_design.cxx.

Referenced by feasible().

bool ProbeIterator::temperature_in_wanted_range ( PT_pdc *  pdc ) const

inline

Definition at line 1222 of file PT_new_design.cxx.

References get_temperature().

Referenced by feasible().

bool ProbeIterator::feasible ( PT_pdc *  pdc ) const

inline

Definition at line 1227 of file PT_new_design.cxx.

References gc_in_wanted_range(), and temperature_in_wanted_range().

Referenced by ProbeCandidates::generate_for_sequence().

const ProbeOccurrence& ProbeIterator::occurrence ( ) const

inline

Definition at line 1233 of file PT_new_design.cxx.

Referenced by ProbeCandidates::generate_for_sequence().

void ProbeIterator::dump ( FILE *  out ) const

inline

Definition at line 1235 of file PT_new_design.cxx.

References readable_probe(), and ProbeOccurrence::sequence().

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The documentation for this class was generated from the following file:

• PROBE/PT_new_design.cxx