Public Member Functions | List of all members
AP_sequence_simple_protein Class Reference

#include <AP_seq_simple_pro.hxx>

Inheritance diagram for AP_sequence_simple_protein:
Inheritance graph
Collaboration diagram for AP_sequence_simple_protein:
Collaboration graph

Public Member Functions

 AP_sequence_simple_protein (const AliView *aliview)
 ~AP_sequence_simple_protein () OVERRIDE
AP_sequencedup () const OVERRIDE
const ap_proget_sequence () const
ap_proget_sequence ()
- Public Member Functions inherited from AP_sequence
 AP_sequence (const AliView *aliview)
virtual ~AP_sequence ()
GB_ERROR bind_to_species (GBDATA *gb_species)
void unbind_from_species ()
bool is_bound_to_species () const
GBDATAget_bound_species_data () const
void lazy_load_sequence () const
void ensure_sequence_loaded () const
bool hasSequence () const
void forget_sequence ()
size_t get_sequence_length () const
const AP_filterget_filter () const
const AP_weightsget_weights () const
const AliViewget_aliview () const

Additional Inherited Members

- Protected Member Functions inherited from AP_sequence
void mark_sequence_set (bool is_set)
void do_lazy_load () const
- Protected Attributes inherited from AP_sequence
AP_FLOAT cached_wbc

Detailed Description

Definition at line 28 of file AP_seq_simple_pro.hxx.

Constructor & Destructor Documentation

AP_sequence_simple_protein::AP_sequence_simple_protein ( const AliView aliview)

Definition at line 9 of file AP_seq_simple_pro.cxx.

References NULp.

Referenced by dup().

AP_sequence_simple_protein::~AP_sequence_simple_protein ( )

Definition at line 15 of file AP_seq_simple_pro.cxx.

Member Function Documentation

AP_sequence * AP_sequence_simple_protein::dup ( ) const

Implements AP_sequence.

Definition at line 19 of file AP_seq_simple_pro.cxx.

References AP_sequence_simple_protein(), and AP_sequence::get_aliview().

const ap_pro* AP_sequence_simple_protein::get_sequence ( ) const

Definition at line 41 of file AP_seq_simple_pro.hxx.

Referenced by di_protdist::makedists().

ap_pro* AP_sequence_simple_protein::get_sequence ( )

Definition at line 42 of file AP_seq_simple_pro.hxx.

The documentation for this class was generated from the following files: