Inheritance diagram for AP_sequence_simple_protein:

Collaboration diagram for AP_sequence_simple_protein:

Public Member Functions
	AP_sequence_simple_protein (const AliView *aliview)

	~AP_sequence_simple_protein () OVERRIDE

AP_sequence *	dup () const OVERRIDE

const ap_pro *	get_sequence () const

ap_pro *	get_sequence ()

Public Member Functions inherited from AP_sequence
	AP_sequence (const AliView *aliview)

virtual	~AP_sequence ()

GB_ERROR	bind_to_species (GBDATA *gb_species)

void	unbind_from_species ()

bool	is_bound_to_species () const

GBDATA *	get_bound_species_data () const

void	lazy_load_sequence () const

void	ensure_sequence_loaded () const

bool	hasSequence () const

void	forget_sequence ()

size_t	get_sequence_length () const

const AP_filter *	get_filter () const

const AP_weights *	get_weights () const

const AliView *	get_aliview () const

Additional Inherited Members
Protected Member Functions inherited from AP_sequence
void	mark_sequence_set (bool is_set)

void	do_lazy_load () const

Protected Attributes inherited from AP_sequence
AP_FLOAT	cached_wbc

Detailed Description

Definition at line 28 of file AP_seq_simple_pro.hxx.

Constructor & Destructor Documentation

AP_sequence_simple_protein::AP_sequence_simple_protein ( const AliView * aliview )

Definition at line 9 of file AP_seq_simple_pro.cxx.

References NULp.

Referenced by dup().

AP_sequence_simple_protein::~AP_sequence_simple_protein ( )

Definition at line 15 of file AP_seq_simple_pro.cxx.

AP_sequence * AP_sequence_simple_protein::dup ( ) const

virtual

Implements AP_sequence.

Definition at line 19 of file AP_seq_simple_pro.cxx.

const ap_pro* AP_sequence_simple_protein::get_sequence ( ) const

inline

Definition at line 41 of file AP_seq_simple_pro.hxx.

ap_pro* AP_sequence_simple_protein::get_sequence ( )

inline

Definition at line 42 of file AP_seq_simple_pro.hxx.

The documentation for this class was generated from the following files: