SpeciesSpace Class Reference

#include <CT_common.hxx>

Inheritance diagram for SpeciesSpace:

Collaboration diagram for SpeciesSpace:

Public Member Functions
	SpeciesSpace (const CharPtrArray &names_)
	~SpeciesSpace ()
int	get_species_index (const char *name) const
const char *	get_species_name (int idx) const
const CharPtrArray &	get_names () const
const PartitionSize *	get_PartitionSize () const
const PART *	get_allSpecies () const
PART *	create_tree_PART (const TreeNode *tree, const double &weight) const

Detailed Description

Definition at line 166 of file CT_common.hxx.

Constructor & Destructor Documentation

SpeciesSpace::SpeciesSpace

(

const CharPtrArray &

names_

)

Definition at line 16 of file CT_ctree.cxx.

References PartitionSize::create_root(), GB_MIND_CASE, GBS_create_hash(), GBS_write_hash(), and CharPtrArray::size().

SpeciesSpace::~SpeciesSpace

(

)

Definition at line 33 of file CT_ctree.cxx.

References GBS_free_hash(), and NULp.

Member Function Documentation

int SpeciesSpace::get_species_index ( const char *  name ) const

inline

Definition at line 179 of file CT_common.hxx.

References arb_assert, and GBS_read_hash().

const char* SpeciesSpace::get_species_name ( int  idx ) const

inline

Definition at line 184 of file CT_common.hxx.

const CharPtrArray& SpeciesSpace::get_names ( ) const

inline

Definition at line 185 of file CT_common.hxx.

Referenced by ConsensusTree::get_consensus_tree().

const PartitionSize* SpeciesSpace::get_PartitionSize ( ) const

inline

Definition at line 186 of file CT_common.hxx.

Referenced by create_tree_PART(), and ConsensusTree::get_consensus_tree().

const PART* SpeciesSpace::get_allSpecies ( ) const

inline

Definition at line 187 of file CT_common.hxx.

Referenced by ConsensusTree::insert_tree_weighted().

PART * SpeciesSpace::create_tree_PART	(	const TreeNode *	tree,
		const double &	weight
	)		const

Definition at line 174 of file CT_dtree.cxx.

References get_PartitionSize().

Referenced by TreeParts::get_tree_PART(), and ConsensusTree::insert_tree_weighted().

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The documentation for this class was generated from the following files:

• CONSENSUS_TREE/CT_common.hxx
• CONSENSUS_TREE/CT_ctree.cxx
• CONSENSUS_TREE/CT_dtree.cxx