Inheritance diagram for HelixAlignmentQuality:

Collaboration diagram for HelixAlignmentQuality:

Public Member Functions
	HelixAlignmentQuality (GBDATA gb_main_, const AW_helix &helix_, const char ali_, const char species_list, const CharPtrArray &helices, const char bad_symbols)

bool	has_error () const

GB_ERROR	get_error () const

size_t	size () const

size_t	positions () const

BadPositionsForSpeciesConst	results ()

Detailed Description

Definition at line 40 of file ED4_detect_bad_ali.cxx.

Constructor & Destructor Documentation

HelixAlignmentQuality::HelixAlignmentQuality	(	GBDATA *	gb_main_,
		const AW_helix &	helix_,
		const char *	ali_,
		const char *	species_list,
		const CharPtrArray &	helices,
		const char *	bad_symbols
	)

inline

Definition at line 177 of file ED4_detect_bad_ali.cxx.

bool HelixAlignmentQuality::has_error ( ) const

inline

Definition at line 191 of file ED4_detect_bad_ali.cxx.

GB_ERROR HelixAlignmentQuality::get_error ( ) const

inline

Definition at line 192 of file ED4_detect_bad_ali.cxx.

References NULp.

size_t HelixAlignmentQuality::size ( ) const

inline

Definition at line 194 of file ED4_detect_bad_ali.cxx.

References arb_assert.

size_t HelixAlignmentQuality::positions ( ) const

inline

Definition at line 195 of file ED4_detect_bad_ali.cxx.

References arb_assert.

BadPositionsForSpeciesConst HelixAlignmentQuality::results ( )

inline

Definition at line 197 of file ED4_detect_bad_ali.cxx.

References arb_assert.

The documentation for this class was generated from the following file: