SearchSettings Class Reference

Inheritance diagram for SearchSettings:

Collaboration diagram for SearchSettings:

Public Member Functions
void	update (SearchAwarList *awarList)
	SearchSettings (SearchAwarList *awarList)
	~SearchSettings ()
GB_CSTR	get_pattern () const
int	get_min_mismatches () const
int	get_max_mismatches () const
ED4_SEARCH_CASE	get_case_sensitive () const
ED4_SEARCH_TU	get_tu () const
ED4_SEARCH_GAPS	get_pat_gaps () const
ED4_SEARCH_GAPS	get_seq_gaps () const
int	get_open_folded () const
int	get_autoJump () const
int	get_reverse () const
int	get_complement () const
int	get_exact () const

Detailed Description

Definition at line 61 of file ED4_search.cxx.

Constructor & Destructor Documentation

SearchSettings::SearchSettings ( SearchAwarList *  awarList )

inline

Definition at line 103 of file ED4_search.cxx.

References NULp, and update().

SearchSettings::~SearchSettings ( )

inline

Definition at line 104 of file ED4_search.cxx.

Member Function Documentation

void SearchSettings::update ( SearchAwarList *  awarList )

inline

Definition at line 77 of file ED4_search.cxx.

References SearchAwarList::autoJump, aw_message(), ED4_root::aw_root, AW_root::awar(), SearchAwarList::case_sensitive, SearchAwarList::complement, ED4_ROOT, SearchAwarList::exact, IS_AMINO, SearchAwarList::max_mismatches, SearchAwarList::min_mismatches, SearchAwarList::openFolded, SearchAwarList::pat_gaps, SearchAwarList::pattern, AW_awar::read_int(), AW_awar::read_string(), SearchAwarList::reverse, SearchAwarList::seq_gaps, SearchAwarList::tu, and AW_awar::write_int().

Referenced by searchParamsChanged(), and SearchSettings().

GB_CSTR SearchSettings::get_pattern ( ) const

inline

Definition at line 106 of file ED4_search.cxx.

Referenced by save_search_paras_to_file(), and SearchTree::SearchTree().

int SearchSettings::get_min_mismatches ( ) const

inline

Definition at line 107 of file ED4_search.cxx.

Referenced by SearchTree::findMatches(), and save_search_paras_to_file().

int SearchSettings::get_max_mismatches ( ) const

inline

Definition at line 108 of file ED4_search.cxx.

Referenced by SearchTree::findMatches(), and save_search_paras_to_file().

ED4_SEARCH_CASE SearchSettings::get_case_sensitive ( ) const

inline

Definition at line 109 of file ED4_search.cxx.

Referenced by save_search_paras_to_file(), and SearchTree::SearchTree().

ED4_SEARCH_TU SearchSettings::get_tu ( ) const

inline

Definition at line 110 of file ED4_search.cxx.

Referenced by save_search_paras_to_file(), and SearchTree::SearchTree().

ED4_SEARCH_GAPS SearchSettings::get_pat_gaps ( ) const

inline

Definition at line 111 of file ED4_search.cxx.

Referenced by save_search_paras_to_file().

ED4_SEARCH_GAPS SearchSettings::get_seq_gaps ( ) const

inline

Definition at line 112 of file ED4_search.cxx.

Referenced by save_search_paras_to_file().

int SearchSettings::get_open_folded ( ) const

inline

Definition at line 113 of file ED4_search.cxx.

Referenced by save_search_paras_to_file().

int SearchSettings::get_autoJump ( ) const

inline

Definition at line 114 of file ED4_search.cxx.

Referenced by save_search_paras_to_file().

int SearchSettings::get_reverse ( ) const

inline

Definition at line 115 of file ED4_search.cxx.

Referenced by save_search_paras_to_file(), and SearchTree::SearchTree().

int SearchSettings::get_complement ( ) const

inline

Definition at line 116 of file ED4_search.cxx.

Referenced by save_search_paras_to_file(), and SearchTree::SearchTree().

int SearchSettings::get_exact ( ) const

inline

Definition at line 117 of file ED4_search.cxx.

Referenced by save_search_paras_to_file(), and SearchTree::SearchTree().

---

The documentation for this class was generated from the following file:

• EDIT4/ED4_search.cxx