Public Member Functions | List of all members
Aligner Class Reference
Inheritance diagram for Aligner:
Inheritance graph
Collaboration diagram for Aligner:
Collaboration graph

Public Member Functions

 Aligner (GBDATA *gb_main_, FA_alignTarget alignWhat_, GB_CSTR alignment_, GB_CSTR toalign_, Aligner_get_first_selected_species get_first_selected_species_, Aligner_get_next_selected_species get_next_selected_species_, GB_CSTR reference_, Aligner_get_consensus_func get_consensus_, SearchRelativeParams &relSearch_, FA_turn turnAllowed_, const AlignParams &ali_params_, int maxProtection_, bool continue_on_error_, FA_errorAction error_action_)
ARB_ERROR run ()

Detailed Description

Definition at line 1828 of file fast_aligner.cxx.

Constructor & Destructor Documentation

Aligner::Aligner ( GBDATA gb_main_,
FA_alignTarget  alignWhat_,
GB_CSTR  alignment_,
GB_CSTR  toalign_,
Aligner_get_first_selected_species  get_first_selected_species_,
Aligner_get_next_selected_species  get_next_selected_species_,
GB_CSTR  reference_,
Aligner_get_consensus_func  get_consensus_,
SearchRelativeParams relSearch_,
FA_turn  turnAllowed_,
const AlignParams ali_params_,
int  maxProtection_,
bool  continue_on_error_,
FA_errorAction  error_action_ 

Definition at line 1884 of file fast_aligner.cxx.

Member Function Documentation

ARB_ERROR Aligner::run ( )

The documentation for this class was generated from the following file: