ARB
Public Member Functions | List of all members
ED4_orf_terminal Class Reference

#include <ed4_class.hxx>

Inheritance diagram for ED4_orf_terminal:
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Collaboration diagram for ED4_orf_terminal:
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Public Member Functions

 ED4_orf_terminal (const char *id, AW_pos width, AW_pos height, ED4_manager *parent)
 
 ~ED4_orf_terminal () OVERRIDE
 
GB_alignment_type GetAliType () OVERRIDE
 
void SET_aaSeqFlags (int startPos, int strandType)
 
void SET_aaSequence (const char *aaSeq)
 
void SET_aaColor (const char *aaSeq)
 
int GET_aaStartPos ()
 
int GET_aaStrandType ()
 
 DECLARE_DUMP_FOR_LEAFCLASS (ED4_abstract_sequence_terminal)
 
- Public Member Functions inherited from ED4_abstract_sequence_terminal
 ED4_abstract_sequence_terminal (const ED4_objspec &spec_, const char *id, AW_pos width, AW_pos height, ED4_manager *parent)
 
 ~ED4_abstract_sequence_terminal () OVERRIDE
 
int get_length () const OVERRIDE
 
ED4_species_name_terminal * corresponding_species_name_terminal () const
 
PosRange calc_interval_displayed_in_rectangle (AW_screen_area *area_rect)
 
PosRange calc_update_interval ()
 
 DECLARE_DUMP_FOR_BASECLASS (ED4_abstract_sequence_terminal, ED4_text_terminal)
 
- Public Member Functions inherited from ED4_text_terminal
 E4B_AVOID_UNNEEDED_CASTS (text_terminal)
 
void deleted_from_database () OVERRIDE
 
 ED4_text_terminal (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent)
 
 ~ED4_text_terminal () OVERRIDE
 
 DECLARE_DUMP_FOR_BASECLASS (ED4_text_terminal, ED4_terminal)
 
- Public Member Functions inherited from ED4_terminal
 DECLARE_DUMP_FOR_BASECLASS (ED4_terminal, ED4_base)
 
void changed_by_database () OVERRIDE
 
void Show (bool refresh_all, bool is_cleared) OVERRIDE
 
bool calc_bounding_box () FINAL_OVERRIDE
 
ED4_returncode draw_drag_box (AW_pos x, AW_pos y, GB_CSTR text=NULp, int cursor_y=-1)
 
void request_refresh (int clear=1) FINAL_OVERRIDE
 
void resize_requested_children () OVERRIDE
 
void update_requested_children () OVERRIDE
 
void delete_requested_children () OVERRIDE
 
void Delete () OVERRIDE
 
ED4_returncode event_sent_by_parent (AW_event *event, AW_window *aww) OVERRIDE
 
ED4_returncode kill_object ()
 
ED4_basesearch_ID (const char *id) OVERRIDE
 
charresolve_pointer_to_string_copy (int *str_len=NULp) const FINAL_OVERRIDE
 
const charresolve_pointer_to_char_pntr (int *str_len=NULp) const FINAL_OVERRIDE
 
void remove_callbacks () FINAL_OVERRIDE
 
GB_ERROR write_sequence (const char *seq, int seq_len)
 
void scroll_into_view (ED4_window *ed4w)
 
bool setCursorTo (ED4_cursor *cursor, int seq_pos, bool unfoldGroups, ED4_CursorJumpType jump_type)
 
bool is_hidden () const FINAL_OVERRIDE
 
 ED4_terminal (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent)
 
 ~ED4_terminal () OVERRIDE
 
- Public Member Functions inherited from ED4_base
void draw_bb (int color)
 
 DECLARE_DUMP_FOR_ROOTCLASS (ED4_base)
 
GBDATAget_species_pointer () const
 
void set_species_pointer (GBDATA *gbd)
 
bool has_callback () const
 
int adjust_clipping_rectangle ()
 
void resize_dynamic ()
 
ED4_returncode clear_background (int color=0)
 
void set_links (ED4_base *width_ref, ED4_base *height_ref)
 
void set_both_links (ED4_base *ref)
 
void set_property (ED4_properties prop)
 
void clr_property (ED4_properties prop)
 
bool has_property (ED4_properties prop) const
 
void calc_rel_coords (AW_pos *x, AW_pos *y)
 
void calc_world_coords (AW_pos *x, AW_pos *y) const
 
const AW::Positioncalc_world_coords () const
 
void update_world_coords_cache () const
 
AW::Rectangle get_win_area (ED4_window *ed4w) const
 
void request_resize ()
 
void request_resize_of_linked ()
 
void resize_requested_by_link (ED4_base *link)
 
void set_update ()
 
virtual ARB_ERROR route_down_hierarchy (const ED4_route_cb &cb)
 
int calc_group_depth ()
 
void check_all ()
 
short in_border (AW_pos abs_x, AW_pos abs_y, ED4_movemode mode)
 
ED4_returncode set_width ()
 
ED4_AREA_LEVEL get_area_level (ED4_multi_species_manager **multi_species_manager=NULp) const
 
ED4_managerget_parent (ED4_level lev) const
 
void unlink_from_parent ()
 
bool has_parent (ED4_manager *Parent)
 
bool is_child_of (ED4_manager *Parent)
 
ED4_group_manageris_in_folded_group () const
 
charget_name_of_species ()
 
ED4_terminalget_next_terminal ()
 
ED4_terminalget_prev_terminal ()
 
void generate_configuration_string (GBS_strstruct &buffer)
 
const ED4_terminalget_consensus_relevant_terminal () const
 
 ED4_base (const ED4_objspec &spec_, GB_CSTR id, AW_pos width, AW_pos height, ED4_manager *parent)
 
virtual ~ED4_base ()
 
int is_terminal () const
 
int is_text_terminal () const
 
int is_species_name_terminal () const
 
int is_sequence_info_terminal () const
 
int is_sequence_terminal () const
 
int is_orf_terminal () const
 
int is_pure_text_terminal () const
 
int is_columnStat_terminal () const
 
int is_bracket_terminal () const
 
int is_spacer_terminal () const
 
int is_line_terminal () const
 
int is_flag_header_terminal () const
 
int is_flag_terminal () const
 
int is_manager () const
 
int is_sequence_manager () const
 
int is_multi_name_manager () const
 
int is_name_manager () const
 
int is_multi_species_manager () const
 
int is_multi_sequence_manager () const
 
int is_device_manager () const
 
int is_group_manager () const
 
int is_root_group_manager () const
 
int is_abstract_group_manager () const
 
int is_species_manager () const
 
int is_area_manager () const
 
 E4B_DECL_CASTOP (area_manager)
 
 E4B_DECL_CASTOP (abstract_group_manager)
 
 E4B_DECL_CASTOP (bracket_terminal)
 
 E4B_DECL_CASTOP (columnStat_terminal)
 
 E4B_DECL_CASTOP (consensus_sequence_terminal)
 
 E4B_DECL_CASTOP (device_manager)
 
 E4B_DECL_CASTOP (group_manager)
 
 E4B_DECL_CASTOP (line_terminal)
 
 E4B_DECL_CASTOP (manager)
 
 E4B_DECL_CASTOP (multi_name_manager)
 
 E4B_DECL_CASTOP (multi_sequence_manager)
 
 E4B_DECL_CASTOP (multi_species_manager)
 
 E4B_DECL_CASTOP (name_manager)
 
 E4B_DECL_CASTOP (orf_terminal)
 
 E4B_DECL_CASTOP (pure_text_terminal)
 
 E4B_DECL_CASTOP (root_group_manager)
 
 E4B_DECL_CASTOP (sequence_info_terminal)
 
 E4B_DECL_CASTOP (sequence_manager)
 
 E4B_DECL_CASTOP (sequence_terminal)
 
 E4B_DECL_CASTOP (spacer_terminal)
 
 E4B_DECL_CASTOP (species_manager)
 
 E4B_DECL_CASTOP (species_name_terminal)
 
 E4B_DECL_CASTOP (terminal)
 
 E4B_DECL_CASTOP (text_terminal)
 
 E4B_DECL_CASTOP (flag_header_terminal)
 
 E4B_DECL_CASTOP (flag_terminal)
 
ED4_species_manager * containing_species_manager () const
 
bool is_consensus_manager () const
 
bool is_SAI_manager () const
 
bool is_species_seq_manager () const
 
ED4_species_type get_species_type () const
 
bool inside_consensus_manager () const
 
bool inside_SAI_manager () const
 
bool inside_species_seq_manager () const
 
bool is_consensus_terminal () const
 
bool is_SAI_terminal () const
 
bool is_species_seq_terminal () const
 
bool is_consensus_sequence_terminal () const
 

Additional Inherited Members

- Static Public Member Functions inherited from ED4_base
static void touch_world_cache ()
 
- Public Attributes inherited from ED4_abstract_sequence_terminal
charspecies_name
 
- Public Attributes inherited from ED4_terminal
struct {
   unsigned int   deleted: 1
 
tflag
 
long curr_timestamp
 
- Public Attributes inherited from ED4_base
const ED4_objspecspec
 
ED4_managerparent
 
ED4_properties dynamic_prop
 
charid
 
ED4_index index
 
ED4_basewidth_link
 
ED4_baseheight_link
 
ED4_extension extension
 
ED4_update_info update_info
 
struct {
   unsigned int   hidden: 1
 
flag
 

Detailed Description

Definition at line 1949 of file ed4_class.hxx.

Constructor & Destructor Documentation

ED4_orf_terminal::ED4_orf_terminal ( const char id,
AW_pos  width,
AW_pos  height,
ED4_manager parent 
)

Definition at line 894 of file ED4_terminal.cxx.

References NULp.

ED4_orf_terminal::~ED4_orf_terminal ( )

Definition at line 904 of file ED4_terminal.cxx.

Member Function Documentation

GB_alignment_type ED4_orf_terminal::GetAliType ( )
inlinevirtual

Implements ED4_abstract_sequence_terminal.

Definition at line 1967 of file ed4_class.hxx.

References GB_AT_AA.

void ED4_orf_terminal::SET_aaSeqFlags ( int  startPos,
int  strandType 
)
inline

Definition at line 1969 of file ed4_class.hxx.

Referenced by PV_AddNewAAseqTerminals().

void ED4_orf_terminal::SET_aaSequence ( const char aaSeq)
inline

Definition at line 1970 of file ed4_class.hxx.

Referenced by TranslateGeneToAminoAcidSequence().

void ED4_orf_terminal::SET_aaColor ( const char aaSeq)
inline

Definition at line 1971 of file ed4_class.hxx.

Referenced by TranslateGeneToAminoAcidSequence().

int ED4_orf_terminal::GET_aaStartPos ( )
inline
int ED4_orf_terminal::GET_aaStrandType ( )
inline
ED4_orf_terminal::DECLARE_DUMP_FOR_LEAFCLASS ( ED4_abstract_sequence_terminal  )

The documentation for this class was generated from the following files: