Public Attributes | |
| short | choice |
| short | err |
| short | nseq |
| long | seqlen |
| long | maxseq |
| long | seqlencount |
| short | topnseq |
| long | topseqlen |
| const char * | fname |
| char * | seq |
| char * | seqid |
| char | matchchar |
| boolean | allDone |
| boolean | done |
| boolean | filestart |
| boolean | addit |
| FILE * | f |
| long | linestart |
| char | s [256] |
| char * | sp |
| int(* | isseqcharfirst8 )() |
| int(* | isseqchar )() |
Detailed Description
Definition at line 96 of file ureadseq.c.
Member Data Documentation
| short ReadSeqVars::choice |
Definition at line 97 of file ureadseq.c.
Referenced by readLoop(), readMSF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPhylipInterleaved(), readPlain(), readSeq(), readSeqFp(), and readUWGCG().
| short ReadSeqVars::err |
Definition at line 97 of file ureadseq.c.
Referenced by addseq(), readSeq(), readSeqFp(), and readSeqMain().
| short ReadSeqVars::nseq |
Definition at line 97 of file ureadseq.c.
Referenced by addinfo(), readLoop(), readMSF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPhylipInterleaved(), readPlain(), readSeq(), readSeqFp(), and readUWGCG().
| long ReadSeqVars::seqlen |
Definition at line 98 of file ureadseq.c.
Referenced by addseq(), CRC32checksum(), GCGchecksum(), listSeqs(), readLoop(), readMSF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPhylipInterleaved(), readPlain(), readSeq(), readSeqFp(), readSeqMain(), readUWGCG(), and writeSeq().
| long ReadSeqVars::maxseq |
Definition at line 98 of file ureadseq.c.
Referenced by addseq(), readSeq(), and readSeqFp().
| long ReadSeqVars::seqlencount |
Definition at line 98 of file ureadseq.c.
Referenced by countseq(), endPhylipSequential(), readPAUPinterleaved(), readPAUPsequential(), readPhylipInterleaved(), and readPhylipSequential().
| short ReadSeqVars::topnseq |
Definition at line 99 of file ureadseq.c.
Referenced by readPAUPinterleaved(), readPhylipInterleaved(), readPhylipSequential(), and readSeqMain().
| long ReadSeqVars::topseqlen |
Definition at line 100 of file ureadseq.c.
Referenced by endPhylipSequential(), readPAUPsequential(), readPhylipInterleaved(), readPhylipSequential(), and readSeqMain().
| const char* ReadSeqVars::fname |
Definition at line 101 of file ureadseq.c.
Referenced by readPlain(), readSeq(), and readSeqFp().
| char* ReadSeqVars::seq |
Definition at line 102 of file ureadseq.c.
Referenced by addseq(), readSeq(), readSeqFp(), and readSeqMain().
| char * ReadSeqVars::seqid |
Definition at line 102 of file ureadseq.c.
Referenced by listSeqs(), readEMBL(), readFitch(), readGenBank(), readIG(), readLoop(), readMSF(), readNBRF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPearson(), readPhylipInterleaved(), readPhylipSequential(), readPIR(), readPlain(), readSeq(), readSeqFp(), readSeqMain(), readStrider(), readUWGCG(), and readZuker().
| char ReadSeqVars::matchchar |
Definition at line 102 of file ureadseq.c.
Referenced by readPAUPinterleaved(), and readSeqMain().
| boolean ReadSeqVars::allDone |
Definition at line 103 of file ureadseq.c.
Referenced by readEMBL(), readFitch(), readGenBank(), readIG(), readLoop(), readMSF(), readNBRF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPearson(), readPhylipInterleaved(), readPhylipSequential(), readPIR(), readPlain(), readSeq(), readSeqFp(), readSeqMain(), readStrider(), readUWGCG(), and readZuker().
| boolean ReadSeqVars::done |
Definition at line 103 of file ureadseq.c.
Referenced by readLoop(), readMSF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPhylipInterleaved(), readPlain(), readUWGCG(), and seqFileFormatFp().
| boolean ReadSeqVars::filestart |
Definition at line 103 of file ureadseq.c.
Referenced by readSeq(), readSeqFp(), and readSeqMain().
| boolean ReadSeqVars::addit |
Definition at line 103 of file ureadseq.c.
Referenced by addinfo(), addseq(), readLoop(), readMSF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPhylipInterleaved(), readPlain(), readSeq(), readSeqFp(), and readUWGCG().
| FILE* ReadSeqVars::f |
Definition at line 104 of file ureadseq.c.
Referenced by GetLine(), readEMBL(), readFitch(), readGenBank(), readIG(), readLoop(), readMSF(), readNBRF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPearson(), readPhylipInterleaved(), readPhylipSequential(), readPIR(), readPlain(), readSeq(), readSeqFp(), readSeqMain(), readStrider(), readUWGCG(), readZuker(), and unGetLine().
| long ReadSeqVars::linestart |
Definition at line 105 of file ureadseq.c.
Referenced by GetLine(), readSeqMain(), seqFileFormatFp(), and unGetLine().
| char ReadSeqVars::s[256] |
Definition at line 106 of file ureadseq.c.
Referenced by endEMBL(), endFitch(), endGB(), endIG(), endNBRF(), endPearson(), endPhylipSequential(), endPIR(), endStrider(), endZuker(), GetLine(), readEMBL(), readFitch(), readGenBank(), readIG(), readLoop(), readMSF(), readNBRF(), readOlsen(), readPAUPinterleaved(), readPAUPsequential(), readPearson(), readPhylipInterleaved(), readPhylipSequential(), readPIR(), readPlain(), readSeqMain(), readStrider(), readUWGCG(), and readZuker().
| char * ReadSeqVars::sp |
Definition at line 106 of file ureadseq.c.
Referenced by seqFileFormatFp().
| int(* ReadSeqVars::isseqcharfirst8)() |
Definition at line 108 of file ureadseq.c.
Referenced by addseq(), readGenBank(), readSeq(), and readSeqFp().
| int(* ReadSeqVars::isseqchar)() |
Definition at line 109 of file ureadseq.c.
Referenced by addinfo(), addseq(), countseq(), readGenBank(), readSeq(), and readSeqFp().
The documentation for this struct was generated from the following file:
- READSEQ/ureadseq.c
