ARB
Public Member Functions | List of all members
BI_ecoli_ref Struct Reference

#include <BI_basepos.hxx>

Inheritance diagram for BI_ecoli_ref:
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Collaboration diagram for BI_ecoli_ref:
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Public Member Functions

 BI_ecoli_ref ()
 
void init (const char *seq, int size)
 
GB_ERROR init (GBDATA *gb_main)
 
GB_ERROR init (GBDATA *gb_main, char *alignment_name, char *ref_name)
 
- Public Member Functions inherited from BasePosition
void initialize (const char *seq, int size)
 
void initialize (const char *seq, int size, const CharPredicate &is_gap)
 
 BasePosition ()
 
 BasePosition (const char *seq, int size)
 
 BasePosition (const char *seq, int size, const CharPredicate &is_gap)
 
 ~BasePosition ()
 
bool gotData () const
 
int abs_2_rel (int abs) const
 
int rel_2_abs (int rel) const
 
int first_base_abspos () const
 
int last_base_abspos () const
 
int base_count () const
 
int abs_count () const
 

Detailed Description

Definition at line 106 of file BI_basepos.hxx.

Constructor & Destructor Documentation

BI_ecoli_ref::BI_ecoli_ref ( )
inline

Definition at line 107 of file BI_basepos.hxx.

Member Function Documentation

void BI_ecoli_ref::init ( const char seq,
int  size 
)
inline
GB_ERROR BI_ecoli_ref::init ( GBDATA gb_main)

Definition at line 58 of file BI_basepos.cxx.

References GBT_get_default_alignment(), GBT_get_default_ref(), init(), and ta.

GB_ERROR BI_ecoli_ref::init ( GBDATA gb_main,
char alignment_name,
char ref_name 
)

The documentation for this struct was generated from the following files: