ARB
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#include <BI_basepos.hxx>
Public Member Functions | |
BI_ecoli_ref () | |
void | init (const char *seq, int size) |
GB_ERROR | init (GBDATA *gb_main) |
GB_ERROR | init (GBDATA *gb_main, char *alignment_name, char *ref_name) |
Public Member Functions inherited from BasePosition | |
void | initialize (const char *seq, int size) |
void | initialize (const char *seq, int size, const CharPredicate &is_gap) |
BasePosition () | |
BasePosition (const char *seq, int size) | |
BasePosition (const char *seq, int size, const CharPredicate &is_gap) | |
~BasePosition () | |
bool | gotData () const |
int | abs_2_rel (int abs) const |
int | rel_2_abs (int rel) const |
int | first_base_abspos () const |
int | last_base_abspos () const |
int | base_count () const |
int | abs_count () const |
Definition at line 106 of file BI_basepos.hxx.
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inline |
Definition at line 107 of file BI_basepos.hxx.
Definition at line 109 of file BI_basepos.hxx.
References BasePosition::initialize().
Referenced by ED4_root::create_hierarchy(), ED4_alignment_length_changed(), init(), Structure3D::MapCurrentSpeciesToEcoliTemplate(), PT_build_species_hash(), and reload_ecoli_cb().
Definition at line 58 of file BI_basepos.cxx.
References GB_await_error(), GBT_get_default_alignment(), GBT_get_default_ref(), init(), and ta.
Definition at line 74 of file BI_basepos.cxx.
References GB_await_error(), GB_read_char_pntr(), GBS_global_string(), GBT_find_SAI(), GBT_find_sequence(), GBT_get_alignment_len(), init(), NULp, and ta.