ED4_reference Class Reference

#include <ed4_seq_colors.hxx>

Inheritance diagram for ED4_reference:

Collaboration diagram for ED4_reference:

Public Member Functions
	ED4_reference ()
	~ED4_reference ()
void	set_nodiff_indicator (char ind)
void	set_case_sensitive (bool mindcase_)
void	set_gap_handling (bool mindgaptype_, const char *gaptypes)
void	clear ()
void	define (const ED4_sequence_terminal *rterm)
bool	is_set () const
void	expand_to_length (int len)
int	convert (char c, int pos) const
bool	reference_species_is (const ED4_sequence_terminal *term) const
bool	only_show_diff_for (const ED4_sequence_terminal *term) const
bool	reference_is_a_consensus () const
void	data_changed_cb (ED4_species_manager *calledFrom)

Detailed Description

Definition at line 53 of file ed4_seq_colors.hxx.

Constructor & Destructor Documentation

ED4_reference::ED4_reference

(

)

Definition at line 271 of file ED4_seq_colors.cxx.

ED4_reference::~ED4_reference

(

)

Definition at line 281 of file ED4_seq_colors.cxx.

References clear().

Member Function Documentation

void ED4_reference::set_nodiff_indicator ( char  ind )

inline

Definition at line 72 of file ed4_seq_colors.hxx.

Referenced by update_reference_settings().

void ED4_reference::set_case_sensitive ( bool  mindcase_ )

inline

Definition at line 73 of file ed4_seq_colors.hxx.

Referenced by update_reference_settings().

void ED4_reference::set_gap_handling	(	bool	mindgaptype_,
		const char *	gaptypes
	)

Definition at line 289 of file ED4_seq_colors.cxx.

References is_gap(), and safeCharIndex().

Referenced by update_reference_settings().

void ED4_reference::clear

(

)

Definition at line 332 of file ED4_seq_colors.cxx.

References ED4_base::get_parent(), LEV_SPECIES, NULp, refdata_changed_cb(), refdata_deleted_cb(), and ED4_manager::remove_delete_callback().

Referenced by define(), set_diff_reference(), and ~ED4_reference().

void ED4_reference::define

(

const ED4_sequence_terminal *

rterm

)

Definition at line 345 of file ED4_seq_colors.cxx.

References ED4_manager::add_delete_callback(), clear(), ED4_base::get_parent(), LEV_SPECIES, refdata_changed_cb(), and refdata_deleted_cb().

Referenced by set_diff_reference().

bool ED4_reference::is_set ( ) const

inline

Definition at line 79 of file ed4_seq_colors.hxx.

Referenced by diff_type_changed_cb(), ED4_create_viewDifferences_window(), ED4_toggle_viewDifferences(), ED4_viewDifferences_announceTerminalChange(), expand_to_length(), only_show_diff_for(), reference_is_a_consensus(), and reference_species_is().

void ED4_reference::expand_to_length

(

int

len

)

Definition at line 298 of file ED4_seq_colors.cxx.

References is_set().

int ED4_reference::convert ( char  c, int  pos  ) const

inline

Definition at line 82 of file ed4_seq_colors.hxx.

References safeCharIndex().

bool ED4_reference::reference_species_is ( const ED4_sequence_terminal *  term ) const

inline

Definition at line 92 of file ed4_seq_colors.hxx.

References e4_assert, and is_set().

Referenced by only_show_diff_for().

bool ED4_reference::only_show_diff_for ( const ED4_sequence_terminal *  term ) const

inline

Definition at line 96 of file ed4_seq_colors.hxx.

References is_set(), and reference_species_is().

bool ED4_reference::reference_is_a_consensus

(

)

const

Definition at line 356 of file ED4_seq_colors.cxx.

References ED4_base::is_consensus_sequence_terminal(), and is_set().

Referenced by ED4_consensus_definition_changed().

void ED4_reference::data_changed_cb

(

ED4_species_manager *

calledFrom

)

Definition at line 315 of file ED4_seq_colors.cxx.

References e4_assert, ED4_base::get_parent(), and LEV_SPECIES.

Referenced by ED4_consensus_definition_changed(), and refdata_changed_cb().

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The documentation for this class was generated from the following files:

• EDIT4/ed4_seq_colors.hxx
• EDIT4/ED4_seq_colors.cxx