ST_rate_matrix Class Reference

#include <st_ml.hxx>

Public Member Functions
	ST_rate_matrix ()
void	set (double dist, double TT_ratio)
void	transform (const ST_base_vector &in, ST_base_vector &out) const
void	print ()

Detailed Description

Definition at line 97 of file st_ml.hxx.

Constructor & Destructor Documentation

ST_rate_matrix::ST_rate_matrix ( )

inline

Definition at line 105 of file st_ml.hxx.

Member Function Documentation

void ST_rate_matrix::set	(	double	dist,
		double	TT_ratio
	)

Definition at line 120 of file ST_ml.cxx.

References ST_MAX_BASE.

void ST_rate_matrix::transform ( const ST_base_vector &  in, ST_base_vector &  out  ) const

inline

Definition at line 138 of file ST_ml.cxx.

References ST_base_vector::b, ST_base_vector::ld_lik, ST_base_vector::lik, ST_A, ST_C, ST_G, ST_GAP, ST_T, and ST_base_vector::summarize().

Referenced by MostLikelySeq::calc_out(), and MostLikelySeq::calculate_ancestor().

void ST_rate_matrix::print

(

)

Definition at line 128 of file ST_ml.cxx.

References ST_MAX_BASE.

---

The documentation for this class was generated from the following files:

• STAT/st_ml.hxx
• STAT/ST_ml.cxx