LooseBases Class Reference

Public Member Functions
bool	is_empty () const
void	clear ()
void	memorize (ExplicitRange range)
ExplicitRange	recall ()
int	follow_ali_change (const AliChange &change)
void	append (LooseBases &loose)
int	follow_ali_change_and_append (LooseBases &loose, const AliChange &change)

Detailed Description

Definition at line 299 of file fast_aligner.cxx.

Member Function Documentation

bool LooseBases::is_empty ( ) const

inline

Definition at line 306 of file fast_aligner.cxx.

Referenced by alignToNextRelative(), and follow_ali_change().

void LooseBases::clear ( )

inline

Definition at line 307 of file fast_aligner.cxx.

Referenced by Aligner::run().

void LooseBases::memorize ( ExplicitRange  range )

inline

Definition at line 309 of file fast_aligner.cxx.

Referenced by cannot_fast_align(), and insertClustalValigned().

ExplicitRange LooseBases::recall ( )

inline

Definition at line 312 of file fast_aligner.cxx.

Referenced by alignToNextRelative().

int LooseBases::follow_ali_change ( const AliChange &  change )

inline

Definition at line 317 of file fast_aligner.cxx.

References AliChange::follow(), and is_empty().

Referenced by follow_ali_change_and_append().

void LooseBases::append ( LooseBases &  loose )

inline

Definition at line 328 of file fast_aligner.cxx.

Referenced by alignToNextRelative(), and follow_ali_change_and_append().

int LooseBases::follow_ali_change_and_append ( LooseBases &  loose, const AliChange &  change  )

inline

Definition at line 329 of file fast_aligner.cxx.

References append(), and follow_ali_change().

Referenced by alignToNextRelative().

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The documentation for this class was generated from the following file:

• SL/FAST_ALIGNER/fast_aligner.cxx