ARB: ali_aligner_last_cell Struct Reference

ARB

#include <ali_aligner.hxx>

Inheritance diagram for ali_aligner_last_cell:

Inheritance graph

Collaboration diagram for ali_aligner_last_cell:

Collaboration graph

Public Member Functions
	ali_aligner_last_cell (ALI_PROFILE *prof)

void	insert_left (unsigned long start, unsigned char operation, float costs)

void	insert_up (unsigned long start, unsigned char operation, float costs)

void	update_border (unsigned long start_x, unsigned long end_x, unsigned long start_y, unsigned long end_y)

void	update_left (ali_aligner_cell *akt_cell, unsigned long akt_pos, unsigned long start_x, unsigned long end_x)

void	update_up (ali_aligner_cell *akt_cell, unsigned long akt_pos, unsigned long start_y, unsigned long end_y)

void	update_up (ali_aligner_column *akt_col, unsigned long start_y, unsigned long end_y)

void	print ()

Public Member Functions inherited from Noncopyable
	Noncopyable ()

Public Attributes
ALI_PROFILE *	profile

float	d1

float	d2

float	d3

ALI_TLIST< ali_pathmap_up_pointer >	left_starts

ALI_TLIST< ali_pathmap_up_pointer >	up_starts

Detailed Description

Definition at line 164 of file ali_aligner.hxx.

Constructor & Destructor Documentation

ali_aligner_last_cell::ali_aligner_last_cell ( ALI_PROFILE * prof )

inline

Definition at line 170 of file ali_aligner.hxx.

Member Function Documentation

void ali_aligner_last_cell::insert_left	(	unsigned long	start,
		unsigned char	operation,
		float	costs
	)

inline

Definition at line 175 of file ali_aligner.hxx.

References ALI_TLIST< T >::append_end(), ALI_TLIST< T >::make_empty(), ali_pathmap_up_pointer::operation, ali_pathmap_up_pointer::start, and start.

Referenced by update_border(), and update_left().

void ali_aligner_last_cell::insert_up	(	unsigned long	start,
		unsigned char	operation,
		float	costs
	)

inline

Definition at line 187 of file ali_aligner.hxx.

References ALI_TLIST< T >::append_end(), ALI_TLIST< T >::make_empty(), ali_pathmap_up_pointer::operation, ali_pathmap_up_pointer::start, and start.

Referenced by update_border(), and update_up().

void ali_aligner_last_cell::update_border	(	unsigned long	start_x,
		unsigned long	end_x,
		unsigned long	start_y,
		unsigned long	end_y
	)

inline

Definition at line 199 of file ali_aligner.hxx.

References ALI_LEFT, ALI_UP, insert_left(), insert_up(), ALI_PROFILE::w_del_multi(), and ALI_PROFILE::w_ins_multi().

void ali_aligner_last_cell::update_left	(	ali_aligner_cell *	akt_cell,
		unsigned long	akt_pos,
		unsigned long	start_x,
		unsigned long	end_x
	)

inline

Definition at line 210 of file ali_aligner.hxx.

References ALI_DIAG, ALI_UP, ali_aligner_cell::d1, ali_aligner_cell::d2, if, insert_left(), min, and ALI_PROFILE::w_ins_multi_cheap().

void ali_aligner_last_cell::update_up	(	ali_aligner_cell *	akt_cell,
		unsigned long	akt_pos,
		unsigned long	start_y,
		unsigned long	end_y
	)

inline

Definition at line 224 of file ali_aligner.hxx.

References ALI_DIAG, ALI_LEFT, ali_aligner_cell::d2, ali_aligner_cell::d3, if, insert_up(), min, and ALI_PROFILE::w_del_multi_cheap().

Referenced by update_up().

void ali_aligner_last_cell::update_up	(	ali_aligner_column *	akt_col,
		unsigned long	start_y,
		unsigned long	end_y
	)

inline

Definition at line 238 of file ali_aligner.hxx.

References ali_aligner_column::cells, ali_aligner_column::column_length, and update_up().

void ali_aligner_last_cell::print ( )

inline

Definition at line 250 of file ali_aligner.hxx.

References ALI_TLIST< T >::first(), ALI_TLIST< T >::has_next(), ALI_TLIST< T >::is_empty(), ALI_TLIST< T >::next(), ali_pathmap_up_pointer::operation, and ali_pathmap_up_pointer::start.

Member Data Documentation

ALI_PROFILE* ali_aligner_last_cell::profile

Definition at line 165 of file ali_aligner.hxx.

float ali_aligner_last_cell::d1

Definition at line 166 of file ali_aligner.hxx.

float ali_aligner_last_cell::d2

Definition at line 166 of file ali_aligner.hxx.

float ali_aligner_last_cell::d3

Definition at line 166 of file ali_aligner.hxx.

ALI_TLIST<ali_pathmap_up_pointer> ali_aligner_last_cell::left_starts

Definition at line 167 of file ali_aligner.hxx.

ALI_TLIST<ali_pathmap_up_pointer> ali_aligner_last_cell::up_starts

Definition at line 168 of file ali_aligner.hxx.

The documentation for this struct was generated from the following file:

NALIGNER/ali_aligner.hxx