PartialSequence Class Reference

Public Member Functions
	PartialSequence (GBDATA *gb_species_)
	PartialSequence (const PartialSequence &other)
	DECLARE_ASSIGNMENT_OPERATOR (PartialSequence)
	~PartialSequence ()
GBDATA *	get_species () const
const AP_tree_nlen *	get_best_match () const
AP_FLOAT	get_branchlength () const
void	test_match (const AP_tree_nlen *leaf_full)
bool	is_multi_match () const
const char *	get_name () const
string	get_multilist () const
AP_tree_nlen *	release ()
void	dump (const char *whichMatch) const

Detailed Description

Definition at line 738 of file PARS_main.cxx.

Constructor & Destructor Documentation

PartialSequence::PartialSequence ( GBDATA *  gb_species_ )

inline

Definition at line 759 of file PARS_main.cxx.

PartialSequence::PartialSequence ( const PartialSequence &  other )

inline

Definition at line 768 of file PARS_main.cxx.

References ap_assert.

PartialSequence::~PartialSequence ( )

inline

Definition at line 781 of file PARS_main.cxx.

References ap_assert.

Member Function Documentation

PartialSequence::DECLARE_ASSIGNMENT_OPERATOR

(

PartialSequence

)

GBDATA* PartialSequence::get_species ( ) const

inline

Definition at line 783 of file PARS_main.cxx.

const AP_tree_nlen* PartialSequence::get_best_match ( ) const

inline

Definition at line 784 of file PARS_main.cxx.

AP_FLOAT PartialSequence::get_branchlength ( ) const

inline

Definition at line 785 of file PARS_main.cxx.

void PartialSequence::test_match

(

const AP_tree_nlen *

leaf_full

)

Definition at line 816 of file PARS_main.cxx.

bool PartialSequence::is_multi_match ( ) const

inline

Definition at line 787 of file PARS_main.cxx.

const char* PartialSequence::get_name ( ) const

inline

Definition at line 789 of file PARS_main.cxx.

References ap_assert.

string PartialSequence::get_multilist ( ) const

inline

Definition at line 795 of file PARS_main.cxx.

References ap_assert, and string().

AP_tree_nlen* PartialSequence::release ( )

inline

Definition at line 800 of file PARS_main.cxx.

References NULp, and s.

void PartialSequence::dump ( const char *  whichMatch ) const

inline

Definition at line 807 of file PARS_main.cxx.

References ap_assert.

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The documentation for this class was generated from the following file:

• PARSIMONY/PARS_main.cxx