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PartialSequence Class Reference

Public Member Functions

 PartialSequence (GBDATA *gb_species_)
 
 PartialSequence (const PartialSequence &other)
 
 DECLARE_ASSIGNMENT_OPERATOR (PartialSequence)
 
 ~PartialSequence ()
 
GBDATAget_species () const
 
const AP_tree_nlen * get_best_match () const
 
AP_FLOAT get_branchlength () const
 
void test_match (const AP_tree_nlen *leaf_full)
 
bool is_multi_match () const
 
const charget_name () const
 
string get_multilist () const
 
AP_tree_nlen * release ()
 
void dump (const char *whichMatch) const
 

Detailed Description

Definition at line 739 of file PARS_main.cxx.

Constructor & Destructor Documentation

PartialSequence::PartialSequence ( GBDATA gb_species_)
inline

Definition at line 760 of file PARS_main.cxx.

PartialSequence::PartialSequence ( const PartialSequence other)
inline

Definition at line 769 of file PARS_main.cxx.

References ap_assert.

PartialSequence::~PartialSequence ( )
inline

Definition at line 782 of file PARS_main.cxx.

References ap_assert.

Member Function Documentation

PartialSequence::DECLARE_ASSIGNMENT_OPERATOR ( PartialSequence  )
GBDATA* PartialSequence::get_species ( ) const
inline

Definition at line 784 of file PARS_main.cxx.

const AP_tree_nlen* PartialSequence::get_best_match ( ) const
inline

Definition at line 785 of file PARS_main.cxx.

AP_FLOAT PartialSequence::get_branchlength ( ) const
inline

Definition at line 786 of file PARS_main.cxx.

void PartialSequence::test_match ( const AP_tree_nlen *  leaf_full)

Definition at line 817 of file PARS_main.cxx.

bool PartialSequence::is_multi_match ( ) const
inline

Definition at line 788 of file PARS_main.cxx.

const char* PartialSequence::get_name ( ) const
inline

Definition at line 790 of file PARS_main.cxx.

References ap_assert.

string PartialSequence::get_multilist ( ) const
inline

Definition at line 796 of file PARS_main.cxx.

References ap_assert, and string().

AP_tree_nlen* PartialSequence::release ( )
inline

Definition at line 801 of file PARS_main.cxx.

References NULp, and s.

void PartialSequence::dump ( const char whichMatch) const
inline

Definition at line 808 of file PARS_main.cxx.

References ap_assert.


The documentation for this class was generated from the following file: