ConsensusTree Class Reference

#include <CT_ctree.hxx>

Inheritance diagram for ConsensusTree:

Collaboration diagram for ConsensusTree:

Public Member Functions
	ConsensusTree (const CharPtrArray &names_)
__ATTR__USERESULT GB_ERROR	insert_tree_weighted (const TreeNode *tree, int leafs, double weight, bool provideProgress)
SizeAwareTree *	get_consensus_tree (GB_ERROR &error)
Public Member Functions inherited from SpeciesSpace
	SpeciesSpace (const CharPtrArray &names_)
	~SpeciesSpace ()
int	get_species_index (const char *name) const
const char *	get_species_name (int idx) const
const CharPtrArray &	get_names () const
const PartitionSize *	get_PartitionSize () const
const PART *	get_allSpecies () const
PART *	create_tree_PART (const TreeNode *tree, const double &weight) const
Public Member Functions inherited from DeconstructedTree
	DeconstructedTree (const SpeciesSpace &specSpace_)
	~DeconstructedTree ()
__ATTR__USERESULT GB_ERROR	deconstruct_weighted (const TreeNode *tree, const PART *wholeTree, int leafs, double weight, bool provideProgress, const PART *allSpecies, DeconstructionMode mode)
void	start_sorted_retrieval ()
size_t	get_part_count () const
PART *	get_part ()
const PART *	peek_part (int idx) const
const PART *	find_part (const TreeNode *node) const
const PART *	find_innermost_part () const

Detailed Description

Definition at line 38 of file CT_ctree.hxx.

Constructor & Destructor Documentation

ConsensusTree::ConsensusTree

(

const CharPtrArray &

names_

)

Definition at line 100 of file CT_ctree.cxx.

Member Function Documentation

GB_ERROR ConsensusTree::insert_tree_weighted	(	const TreeNode *	tree,
		int	leafs,
		double	weight,
		bool	provideProgress
	)

Definition at line 145 of file CT_ctree.cxx.

References SpeciesSpace::create_tree_PART(), DeconstructedTree::deconstruct_weighted(), DMODE_CONSENSUS_TREE, and SpeciesSpace::get_allSpecies().

Referenced by di_calculate_tree_cb(), and ConsensusTreeBuilder::get().

SizeAwareTree * ConsensusTree::get_consensus_tree

(

GB_ERROR &

error

)

Definition at line 150 of file CT_ctree.cxx.

References arb_progress::aborted(), arb_assert, BIG_BRANCHES_TO_BOTTOM, arb_progress::error_if_aborted(), SpeciesSpace::get_names(), DeconstructedTree::get_part(), DeconstructedTree::get_part_count(), SpeciesSpace::get_PartitionSize(), arb_progress::inc_by(), insert_ntree(), ntree_cleanup(), ntree_count_sons(), ntree_get(), ntree_init(), NULp, DeconstructedTree::start_sorted_retrieval(), and triangular_number().

Referenced by di_calculate_tree_cb(), and ConsensusTreeBuilder::get().

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The documentation for this class was generated from the following files:

• CONSENSUS_TREE/CT_ctree.hxx
• CONSENSUS_TREE/CT_ctree.cxx
• CONSENSUS_TREE/CT_rbtree.cxx