ARB
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Public Member Functions | |
SearchRelativesReference (SearchRelativeParams &relSearch_, int max_seq_length_, FA_turn turnAllowed_, GB_CSTR alignment_, const AlignParams &ali_params_) | |
ARB_ERROR | align_to (GBDATA *gb_toalign) const OVERRIDE |
Public Member Functions inherited from AlignmentReference | |
AlignmentReference (GB_CSTR alignment_, int max_seq_length_, const AlignParams &ali_params_) | |
virtual | ~AlignmentReference () |
GB_CSTR | get_alignment () const |
int | get_max_seq_length () const |
const AlignParams & | get_ali_params () const |
Definition at line 1796 of file fast_aligner.cxx.
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inline |
Definition at line 1801 of file fast_aligner.cxx.
Implements AlignmentReference.
Definition at line 1811 of file fast_aligner.cxx.
References alignToNextRelative(), AlignmentReference::get_ali_params(), AlignmentReference::get_alignment(), and AlignmentReference::get_max_seq_length().