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Public Member Functions | List of all members
RealignAttempt Class Reference
Inheritance diagram for RealignAttempt:
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Public Member Functions

 RealignAttempt (const TransTables &allowed_, const char *compressed_dna_, size_t compressed_len_, const char *aligned_protein_, char *target_dna_, size_t target_len_, bool cutoff_dna_)
 
const TransTablesget_remaining_tables () const
 
const FailedAtfailed () const
 

Detailed Description

Definition at line 480 of file TranslateRealign.cxx.

Constructor & Destructor Documentation

RealignAttempt::RealignAttempt ( const TransTables allowed_,
const char compressed_dna_,
size_t  compressed_len_,
const char aligned_protein_,
char target_dna_,
size_t  target_len_,
bool  cutoff_dna_ 
)
inline

Definition at line 493 of file TranslateRealign.cxx.

References ali_assert.

Member Function Documentation

const TransTables& RealignAttempt::get_remaining_tables ( ) const
inline

Definition at line 504 of file TranslateRealign.cxx.

Referenced by Realigner::realign_seq().

const FailedAt& RealignAttempt::failed ( ) const
inline

Definition at line 505 of file TranslateRealign.cxx.

Referenced by Realigner::realign_seq().


The documentation for this class was generated from the following file: