ARB
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#include <ali_prealigner.hxx>
Public Member Functions | |
ALI_PREALIGNER (ALI_PREALIGNER_CONTEXT *context, ALI_PROFILE *profile, unsigned long start_x, unsigned long end_x, unsigned long start_y, unsigned long end_y) | |
~ALI_PREALIGNER () | |
ALI_SEQUENCE * | sequence () |
ALI_SEQUENCE * | sequence_without_inserts () |
ALI_SUB_SOLUTION * | solution () |
ALI_TLIST < ali_prealigner_approx_element * > * | approximation () |
Definition at line 199 of file ali_prealigner.hxx.
ALI_PREALIGNER::ALI_PREALIGNER | ( | ALI_PREALIGNER_CONTEXT * | context, |
ALI_PROFILE * | profile, | ||
unsigned long | start_x, | ||
unsigned long | end_x, | ||
unsigned long | start_y, | ||
unsigned long | end_y | ||
) |
Definition at line 1041 of file ali_prealigner.cxx.
References ali_message(), ali_prealigner_mask::delete_expensive(), ali_prealigner_mask::map, and ALI_PREALIGNER_CONTEXT::max_number_of_maps.
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Definition at line 269 of file ali_prealigner.hxx.
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Definition at line 274 of file ali_prealigner.hxx.
References ali_prealigner_mask::map, ALI_MAP::sequence(), and ALI_PROFILE::sequence().
Referenced by ARB_main().
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inline |
Definition at line 277 of file ali_prealigner.hxx.
References ali_prealigner_mask::map, ALI_PROFILE::sequence(), and ALI_MAP::sequence_without_inserts().
Referenced by ARB_main().
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inline |
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Definition at line 285 of file ali_prealigner.hxx.
References ali_prealigner_approximation::list().
Referenced by ARB_main().