ARB
Public Member Functions | List of all members
ALI_PREALIGNER Class Reference

#include <ali_prealigner.hxx>

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Public Member Functions

 ALI_PREALIGNER (ALI_PREALIGNER_CONTEXT *context, ALI_PROFILE *profile, unsigned long start_x, unsigned long end_x, unsigned long start_y, unsigned long end_y)
 
 ~ALI_PREALIGNER ()
 
ALI_SEQUENCEsequence ()
 
ALI_SEQUENCEsequence_without_inserts ()
 
ALI_SUB_SOLUTIONsolution ()
 
ALI_TLIST
< ali_prealigner_approx_element * > * 
approximation ()
 

Detailed Description

Definition at line 199 of file ali_prealigner.hxx.

Constructor & Destructor Documentation

ALI_PREALIGNER::ALI_PREALIGNER ( ALI_PREALIGNER_CONTEXT context,
ALI_PROFILE profile,
unsigned long  start_x,
unsigned long  end_x,
unsigned long  start_y,
unsigned long  end_y 
)
ALI_PREALIGNER::~ALI_PREALIGNER ( )
inline

Definition at line 269 of file ali_prealigner.hxx.

Member Function Documentation

ALI_SEQUENCE* ALI_PREALIGNER::sequence ( )
inline

Definition at line 274 of file ali_prealigner.hxx.

References ali_prealigner_mask::map, ALI_MAP::sequence(), and ALI_PROFILE::sequence().

Referenced by ARB_main().

ALI_SEQUENCE* ALI_PREALIGNER::sequence_without_inserts ( )
inline
ALI_SUB_SOLUTION* ALI_PREALIGNER::solution ( )
inline

Definition at line 280 of file ali_prealigner.hxx.

References NULp.

Referenced by ARB_main().

ALI_TLIST<ali_prealigner_approx_element *>* ALI_PREALIGNER::approximation ( )
inline

Definition at line 285 of file ali_prealigner.hxx.

References ali_prealigner_approximation::list().

Referenced by ARB_main().


The documentation for this class was generated from the following files: