ARB
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#include <NJ.hxx>
Public Member Functions | |
PH_NEIGHBOURJOINING (const AP_smatrix &smatrix) | |
~PH_NEIGHBOURJOINING () | |
void | join_nodes (long i, long j, AP_FLOAT &leftl, AP_FLOAT &rightlen) |
AP_FLOAT | get_min_ij (long &i, long &j) |
void | get_last_ij (long &i, long &j) |
AP_FLOAT | get_dist (long i, long j) |
PH_NEIGHBOURJOINING::PH_NEIGHBOURJOINING | ( | const AP_smatrix & | smatrix | ) |
Definition at line 91 of file NJ.cxx.
References ARB_calloc(), symmetric_matrix< T >::fast_get(), symmetric_matrix< T >::get_max_value(), PH_NEIGHBOUR_DIST::i, PH_NEIGHBOUR_DIST::j, symmetric_matrix< T >::size(), and PH_NEIGHBOUR_DIST::val.
Definition at line 161 of file NJ.cxx.
References get_dist(), and PH_NEIGHBOUR_DIST::val.
Referenced by neighbourjoining().
Definition at line 129 of file NJ.cxx.
References get_last_ij(), PH_NEIGHBOUR_DIST::i, PH_NEIGHBOUR_DIST::j, PH_NEIGHBOUR_DIST::next, and PH_NEIGHBOUR_DIST::val.
Referenced by neighbourjoining().
Definition at line 195 of file NJ.cxx.
Referenced by get_min_ij(), and neighbourjoining().
Definition at line 200 of file NJ.cxx.
References PH_NEIGHBOUR_DIST::val.
Referenced by join_nodes(), and neighbourjoining().