Public Member Functions | List of all members
AW_helix Class Reference

#include <AW_helix.hxx>

Inheritance diagram for AW_helix:
Inheritance graph
Collaboration diagram for AW_helix:
Collaboration graph

Public Member Functions

 AW_helix (AW_root *awroot)
charseq_2_helix (char *sequence, char undefsymbol= ' ')
char get_symbol (char left, char right, BI_PAIR_TYPE pair_type)
bool is_enabled () const
- Public Member Functions inherited from BI_helix
 BI_helix ()
 ~BI_helix ()
GB_ERROR init (GBDATA *gb_main)
GB_ERROR init (GBDATA *gb_main, const char *alignment_name)
GB_ERROR init (GBDATA *gb_helix_nr, GBDATA *gb_helix, size_t size)
GB_ERROR initFromData (const char *helix_nr, const char *helix, size_t size)
int check_pair (char left, char right, BI_PAIR_TYPE pair_type)
size_t size () const
bool has_entries () const
const BI_helix_entryentry (size_t pos) const
size_t opposite_position (size_t pos) const
BI_PAIR_TYPE pairtype (size_t pos) const
const charhelixNr (size_t pos) const
long first_pair_position () const
long next_pair_position (size_t pos) const
long first_position (const char *helixNr) const
long last_position (const char *helixNr) const

Additional Inherited Members

- Static Public Member Functions inherited from BI_helix
static GB_ERROR get_error ()
- Protected Member Functions inherited from BI_helix
bool is_pairtype (char left, char right, BI_PAIR_TYPE pair_type)
- Protected Attributes inherited from BI_helix
charpairs [HELIX_MAX]
charchar_bind [HELIX_MAX]

Detailed Description

Definition at line 26 of file AW_helix.hxx.

Constructor & Destructor Documentation

AW_helix::AW_helix ( AW_root awroot)

Member Function Documentation

char * AW_helix::seq_2_helix ( char sequence,
char  undefsymbol = ' ' 
char AW_helix::get_symbol ( char  left,
char  right,
BI_PAIR_TYPE  pair_type 
bool AW_helix::is_enabled ( ) const

Definition at line 34 of file AW_helix.hxx.

References BI_helix::size().

Referenced by ED4_calc_terminal_extentions().

The documentation for this class was generated from the following files: