#include <di_protdist.hxx>
Inheritance diagram for di_protdist:
Collaboration diagram for di_protdist:
Public Member Functions | |
| di_protdist (di_codetype codei, di_cattype cati, long nentries, DI_ENTRY **entries, long seq_len, AP_smatrix *matrixi) | |
| ~di_protdist () | |
| GB_ERROR | makedists (bool *aborted_flag) |
Detailed Description
Definition at line 35 of file di_protdist.hxx.
Constructor & Destructor Documentation
| di_protdist::di_protdist | ( | di_codetype | codei, |
| di_cattype | cati, | ||
| long | nentries, | ||
| DI_ENTRY ** | entries, | ||
| long | seq_len, | ||
| AP_smatrix * | matrixi | ||
| ) |
Definition at line 754 of file DI_protdist.cxx.
References DI_MAX_AA, DI_MAX_DIST, KIMURA, NONE, NULp, PAM, and SIMILARITY.
| di_protdist::~di_protdist | ( | ) |
Definition at line 750 of file DI_protdist.cxx.
Member Function Documentation
| GB_ERROR di_protdist::makedists | ( | bool * | aborted_flag | ) |
Definition at line 605 of file DI_protdist.cxx.
References ASX, aw_message(), DEL, di_assert, epsilon, error(), GBS_global_string(), DI_ENTRY::get_prot_seq(), AP_sequence_simple_protein::get_sequence(), GLX, arb_progress::inc_and_check_user_abort(), KIMURA, matrix_halfsize(), NONE, NULp, PAM, symmetric_matrix< T >::set(), SIMILARITY, and VAL.
Referenced by DI_MATRIX::calculate_pro().
The documentation for this class was generated from the following files:
- DIST/di_protdist.hxx
- DIST/DI_protdist.cxx
