FastAlignInsertion Class Reference

#include <seq_search.hxx>

Inheritance diagram for FastAlignInsertion:

Collaboration diagram for FastAlignInsertion:

Public Member Functions
	FastAlignInsertion (long Offset, long Gaps)
	~FastAlignInsertion ()
FastAlignInsertion *	append (long Offset, long Gaps)
void	dump () const
void	dumpAll () const
const FastAlignInsertion *	next () const
long	offset () const
long	gaps () const

Detailed Description

Definition at line 387 of file seq_search.hxx.

Constructor & Destructor Documentation

FastAlignInsertion::FastAlignInsertion ( long  Offset, long  Gaps  )

inline

Definition at line 394 of file seq_search.hxx.

References NULp.

Referenced by append().

FastAlignInsertion::~FastAlignInsertion

(

)

Definition at line 99 of file seq_search.cxx.

Member Function Documentation

FastAlignInsertion* FastAlignInsertion::append ( long  Offset, long  Gaps  )

inline

Definition at line 401 of file seq_search.hxx.

References FastAlignInsertion().

Referenced by FastAlignReport::memorize_insertion().

void FastAlignInsertion::dump ( ) const

inline

Definition at line 404 of file seq_search.hxx.

Referenced by dumpAll().

void FastAlignInsertion::dumpAll ( ) const

inline

Definition at line 407 of file seq_search.hxx.

References dump(), and dumpAll().

Referenced by FastAlignReport::dump(), and dumpAll().

const FastAlignInsertion* FastAlignInsertion::next ( ) const

inline

Definition at line 412 of file seq_search.hxx.

Referenced by alignCompactedTo().

long FastAlignInsertion::offset ( ) const

inline

Definition at line 413 of file seq_search.hxx.

Referenced by alignCompactedTo().

long FastAlignInsertion::gaps ( ) const

inline

Definition at line 414 of file seq_search.hxx.

Referenced by alignCompactedTo().

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The documentation for this class was generated from the following files:

• SL/FAST_ALIGNER/seq_search.hxx
• SL/FAST_ALIGNER/seq_search.cxx