Distributor Class Reference

Public Member Functions
	Distributor (int xcount_, int dnacount)
	Distributor (const Distributor &other)
	DECLARE_ASSIGNMENT_OPERATOR (Distributor)
	~Distributor ()
void	reset ()
int	operator[] (int off) const
int	size () const
GB_ERROR	get_error () const
bool	next ()
bool	mayFailTranslation () const
int	get_score () const
bool	translates_to_Xs (const char *dna, TransTables allowed, TransTables &remaining) const

Detailed Description

Definition at line 296 of file TranslateRealign.cxx.

Constructor & Destructor Documentation

Distributor::Distributor ( int  xcount_, int  dnacount  )

inline

Definition at line 351 of file TranslateRealign.cxx.

Referenced by reset().

Distributor::Distributor ( const Distributor &  other )

inline

Definition at line 368 of file TranslateRealign.cxx.

Distributor::~Distributor ( )

inline

Definition at line 378 of file TranslateRealign.cxx.

Member Function Documentation

Distributor::DECLARE_ASSIGNMENT_OPERATOR

(

Distributor

)

void Distributor::reset ( )

inline

Definition at line 383 of file TranslateRealign.cxx.

References Distributor().

int Distributor::operator[] ( int  off ) const

inline

Definition at line 385 of file TranslateRealign.cxx.

References ali_assert.

int Distributor::size ( ) const

inline

Definition at line 391 of file TranslateRealign.cxx.

Referenced by distribute_xdata().

GB_ERROR Distributor::get_error ( ) const

inline

Definition at line 393 of file TranslateRealign.cxx.

bool Distributor::next ( )

inline

Definition at line 395 of file TranslateRealign.cxx.

bool Distributor::mayFailTranslation ( ) const

inline

Definition at line 402 of file TranslateRealign.cxx.

Referenced by distribute_xdata().

int Distributor::get_score ( ) const

inline

Definition at line 408 of file TranslateRealign.cxx.

Referenced by distribute_xdata().

bool Distributor::translates_to_Xs ( const char *  dna, TransTables  allowed, TransTables &  remaining  ) const

inline

checks whether distribution of 'dna' translates to X's

Parameters

dna	compressed dna
allowed	allowed translation tables
remaining	remaining translation tables

Returns

true if 'dna' translates to X's

Definition at line 417 of file TranslateRealign.cxx.

References ali_assert, AWT_is_codon(), and TransTables::is_subset_of().

Referenced by distribute_xdata().

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The documentation for this class was generated from the following file:

• SL/ALILINK/TranslateRealign.cxx