ARB: FamilyStat Class Reference

ARB

Inheritance diagram for FamilyStat:

Inheritance graph

Collaboration diagram for FamilyStat:

Collaboration graph

Public Member Functions
	FamilyStat (size_t size_, RelativeScoreScaling scaling_)

	~FamilyStat ()

void	calc_rel_matches (int oligo_len, int sequence_length)

const HitCounter &	hits (size_t idx) const

void	limit_hits_for_next_traversal (int hit_limit)

void	count_match (size_t idx)

int	cmp_abs (int a, int b) const

int	cmp_rel (int a, int b) const

Detailed Description

Definition at line 70 of file PT_family.cxx.

Constructor & Destructor Documentation

FamilyStat::FamilyStat	(	size_t	size_,
		RelativeScoreScaling	scaling_
	)

inline

Definition at line 77 of file PT_family.cxx.

FamilyStat::~FamilyStat ( )

inline

Definition at line 83 of file PT_family.cxx.

Member Function Documentation

void FamilyStat::calc_rel_matches	(	int	oligo_len,
		int	sequence_length
	)

inline

Definition at line 85 of file PT_family.cxx.

References HitCounter::calc_rel_match(), probe_struct_global::data, probe_input_data::get_size(), max, min, psg, RSS_BOTH_MAX, RSS_BOTH_MIN, RSS_SOURCE, and RSS_TARGET.

Referenced by find_family().

const HitCounter& FamilyStat::hits ( size_t idx ) const

inline

Definition at line 100 of file PT_family.cxx.

References pt_assert.

Referenced by make_PT_family_list().

void FamilyStat::limit_hits_for_next_traversal ( int hit_limit )

inline

Definition at line 102 of file PT_family.cxx.

References TraversalHitLimit::id, and TraversalHitLimit::limit.

Referenced by find_family().

void FamilyStat::count_match ( size_t idx )

inline

Definition at line 106 of file PT_family.cxx.

References HitCounter::inc().

int FamilyStat::cmp_abs	(	int	a,
		int	b
	)		const

inline

Definition at line 108 of file PT_family.cxx.

References cmp, and HitCounter::cmp_abs().

Referenced by oligo_cmp_abs::operator()().

int FamilyStat::cmp_rel	(	int	a,
		int	b
	)		const

inline

Definition at line 109 of file PT_family.cxx.

References cmp, and HitCounter::cmp_rel().

Referenced by oligo_cmp_rel::operator()().

The documentation for this class was generated from the following file:

PROBE/PT_family.cxx