#include <SQ_helix.h>
Inheritance diagram for SQ_helix:
Collaboration diagram for SQ_helix:
Public Member Functions | |
| SQ_helix (int size) | |
| ~SQ_helix () | |
| void | SQ_calc_helix_layout (const char *sequence, GBDATA *gb_main, char *alignment_name, GBDATA *gb_quality, AP_filter *filter) |
| int | SQ_get_no_helix () const |
| int | SQ_get_weak_helix () const |
| int | SQ_get_strong_helix () const |
Detailed Description
Definition at line 33 of file SQ_helix.h.
Constructor & Destructor Documentation
| SQ_helix::SQ_helix | ( | int | size | ) |
Definition at line 86 of file SQ_helix.h.
| SQ_helix::~SQ_helix | ( | ) |
Definition at line 94 of file SQ_helix.h.
Member Function Documentation
| void SQ_helix::SQ_calc_helix_layout | ( | const char * | sequence, |
| GBDATA * | gb_main, | ||
| char * | alignment_name, | ||
| GBDATA * | gb_quality, | ||
| AP_filter * | filter | ||
| ) |
Definition at line 97 of file SQ_helix.h.
References GB_INT, GB_search(), GB_write_int(), AP_filter::get_filtered_length(), AP_filter::get_filterpos_2_seqpos(), BI_helix::has_entries(), BI_helix::is_pairpos(), BI_helix::opposite_position(), BI_pairdef::pair_strength(), and seq_assert.
Referenced by SQ_pass1(), and SQ_pass1_no_tree().
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inline |
Definition at line 53 of file SQ_helix.h.
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inline |
Definition at line 56 of file SQ_helix.h.
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inline |
Definition at line 59 of file SQ_helix.h.
The documentation for this class was generated from the following file:
- SEQ_QUALITY/SQ_helix.h
