DI_ENTRY Class Reference

#include <di_matr.hxx>

Inheritance diagram for DI_ENTRY:

Collaboration diagram for DI_ENTRY:

Public Member Functions
	DI_ENTRY (GBDATA *gbd, DI_MATRIX *phmatrix_)
	DI_ENTRY (const char *name_, DI_MATRIX *phmatrix_)
	~DI_ENTRY ()
AP_sequence_parsimony *	get_nucl_seq ()
AP_sequence_simple_protein *	get_prot_seq ()

Public Attributes
AP_sequence *	sequence
char *	name
int	group_nr

Detailed Description

Definition at line 75 of file di_matr.hxx.

Constructor & Destructor Documentation

DI_ENTRY::DI_ENTRY	(	GBDATA *	gbd,
		DI_MATRIX *	phmatrix_
	)

Definition at line 280 of file DI_matr.cxx.

References AP_sequence::bind_to_species(), GB_entry(), GBT_read_string(), DI_MATRIX::get_aliname(), DI_MATRIX::get_aliview(), DI_MATRIX::is_AA, AP_sequence::lazy_load_sequence(), name, and sequence.

DI_ENTRY::DI_ENTRY	(	const char *	name_,
		DI_MATRIX *	phmatrix_
	)

Definition at line 306 of file DI_matr.cxx.

DI_ENTRY::~DI_ENTRY

(

)

Definition at line 314 of file DI_matr.cxx.

References name, and sequence.

Member Function Documentation

AP_sequence_parsimony* DI_ENTRY::get_nucl_seq ( )

inline

Definition at line 86 of file di_matr.hxx.

References DOWNCAST.

Referenced by DI_MATRIX::calculate(), and DI_MATRIX::detect_transformation().

AP_sequence_simple_protein* DI_ENTRY::get_prot_seq ( )

inline

Definition at line 87 of file di_matr.hxx.

References DOWNCAST.

Referenced by di_protdist::makedists().

Member Data Documentation

AP_sequence* DI_ENTRY::sequence

Definition at line 84 of file di_matr.hxx.

Referenced by DI_ENTRY(), DI_MATRIX::load(), and ~DI_ENTRY().

char* DI_ENTRY::name

Definition at line 89 of file di_matr.hxx.

Referenced by di_calculate_tree_cb(), DI_ENTRY(), DI_MATRIX::extract_from_tree(), init(), input_cb(), DI_MATRIX::save(), and ~DI_ENTRY().

int DI_ENTRY::group_nr

Definition at line 90 of file di_matr.hxx.

Referenced by DI_MATRIX::compress().

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The documentation for this class was generated from the following files:

• DIST/di_matr.hxx
• DIST/DI_matr.cxx