MG_remaps Class Reference

#include <MG_adapt_ali.hxx>

Inheritance diagram for MG_remaps:

Collaboration diagram for MG_remaps:

Public Member Functions
	MG_remaps (GBDATA *gb_left, GBDATA *gb_right, bool enable, const char *reference_species_names)
	~MG_remaps ()
int	size () const
bool	validIdx (int idx) const
bool	doesRemap () const
const char *	alignment_name (int idx) const
const MG_remap &	remap (int idx) const

Detailed Description

Definition at line 23 of file MG_adapt_ali.hxx.

Constructor & Destructor Documentation

MG_remaps::MG_remaps	(	GBDATA *	gb_left,
		GBDATA *	gb_right,
		bool	enable,
		const char *	reference_species_names
	)

Definition at line 669 of file MG_adapt_ali.cxx.

References ARB_calloc(), GBT_get_alignment_names(), and MG_create_remap().

MG_remaps::~MG_remaps

(

)

Definition at line 684 of file MG_adapt_ali.cxx.

References mg_assert.

Member Function Documentation

int MG_remaps::size ( ) const

inline

Definition at line 32 of file MG_adapt_ali.hxx.

Referenced by MG_adaptAllCopiedAlignments(), and validIdx().

bool MG_remaps::validIdx ( int  idx ) const

inline

Definition at line 34 of file MG_adapt_ali.hxx.

References size().

Referenced by alignment_name(), and remap().

bool MG_remaps::doesRemap ( ) const

inline

Definition at line 37 of file MG_adapt_ali.hxx.

Referenced by MG_adaptAllCopiedAlignments().

const char* MG_remaps::alignment_name ( int  idx ) const

inline

Definition at line 39 of file MG_adapt_ali.hxx.

References arb_assert, and validIdx().

Referenced by MG_adaptAllCopiedAlignments().

const MG_remap& MG_remaps::remap ( int  idx ) const

inline

Definition at line 40 of file MG_adapt_ali.hxx.

References arb_assert, and validIdx().

Referenced by MG_adaptAllCopiedAlignments().

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The documentation for this class was generated from the following files:

• MERGE/MG_adapt_ali.hxx
• MERGE/MG_adapt_ali.cxx